phyloatlas: Access to the 'Phylo-Species Atlas' of Empirical Phylogenies
Provides convenience functions to fetch standardized phylogenetic trees and per-tree provenance metadata from the 'Phylo-Species Atlas' <https://github.com/franciscorichter/phylo-species-atlas> directly from R. The atlas is a curated collection of empirical species-level trees covering Bacteria, Archaea, and Eukaryota, organized into 62 partitions of life with tip labels normalized against a shared dictionary of standardized species identifiers. Functions load any of the standardized trees with species labels resolved from the dictionary, list available trees, and inspect per-tree provenance.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.0) |
| Imports: | ape, utils |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), withr |
| Published: | 2026-06-04 |
| DOI: | 10.32614/CRAN.package.phyloatlas (may not be active yet) |
| Author: | Francisco Richter 
[aut, cre] |
| Maintainer: | Francisco Richter <richtf at usi.ch> |
| BugReports: | https://github.com/franciscorichter/phylo-species-atlas/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/franciscorichter/phylo-species-atlas, https://franciscorichter.github.io/phylo-species-atlas/ |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | phyloatlas results |
Documentation:
| Reference manual: | phyloatlas.html , phyloatlas.pdf |
| Vignettes: |
Getting started with phyloatlas (source, R code) |
Downloads:
| Package source: | phyloatlas_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): phyloatlas_0.1.0.tgz, r-oldrel (arm64): phyloatlas_0.1.0.tgz, r-release (x86_64): not available, r-oldrel (x86_64): phyloatlas_0.1.0.tgz |
Linking:
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