phyloatlas 0.1.0
- Initial CRAN release.
- Four user-facing functions:
load_atlas_tree() — fetch a standardized Newick tree
from the Phylo-Species Atlas, optionally resolving integer tip IDs to
species names via the shared dictionary.
list_trees() — data frame of every tree in the atlas
with provenance fields (study, year, journal, DOI, coverage).
atlas_info() — single-row provenance for a tree by
name.
atlas_clear_cache() — drop the in-session
dictionary/metadata cache.
- In-memory caching of the dictionary and metadata files so repeated
calls in a session don’t re-download.
- Fork / mirror support via the
phyloatlas.base_url
option.
- Bundled offline demo data under
inst/extdata/ so
examples and tests run without network access.