Last updated on 2025-11-17 17:50:22 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/146s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.734, system: 0.068, elapsed: 2.697 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.730, system: 0.216, elapsed: 14.922 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.021, elapsed: 0.386 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.141, system: 0.267, elapsed: 6.425 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.182 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.540, system: 0.606, elapsed: 25.460 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.515, system: 0.035, elapsed: 1.739 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.624, system: 0.294, elapsed: 11.850 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.018, elapsed: 0.299 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.399, system: 0.334, elapsed: 7.593 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.010, elapsed: 0.357 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.492, system: 0.724, elapsed: 22.656 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.773, system: 0.091, elapsed: 3.136 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.647, system: 0.174, elapsed: 16.687 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.012, elapsed: 0.435 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.961, system: 0.186, elapsed: 7.076 seconds]
Computing values for grid cells...
... done. [user: 0.196, system: 0.015, elapsed: 0.361 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.277, system: 0.267, elapsed: 1.577 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.723, system: 0.787, elapsed: 30.583 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.598, system: 0.040, elapsed: 2.791 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.722, system: 0.095, elapsed: 16.416 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.012, elapsed: 0.327 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.969, system: 0.184, elapsed: 7.624 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.003, elapsed: 0.471 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.788, system: 0.444, elapsed: 28.742 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.120, system: 0.802, elapsed: 57.676 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/151s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.779, system: 0.082, elapsed: 3.291 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.802, system: 0.243, elapsed: 18.738 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.017, elapsed: 0.337 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.916, system: 0.258, elapsed: 6.230 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.011, elapsed: 0.273 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.442, system: 0.647, elapsed: 29.977 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.862, system: 0.090, elapsed: 2.717 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.976, system: 0.361, elapsed: 16.224 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.020, elapsed: 0.457 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.021, system: 0.231, elapsed: 9.025 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.005, elapsed: 0.450 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.793, system: 0.754, elapsed: 30.073 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.627, system: 0.043, elapsed: 3.235 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.589, system: 0.137, elapsed: 16.719 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.433 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.825, system: 0.181, elapsed: 8.378 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.005, elapsed: 0.354 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.102, system: 0.251, elapsed: 1.270 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.176, system: 0.656, elapsed: 31.748 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.637, system: 0.039, elapsed: 3.068 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.511, system: 0.075, elapsed: 16.217 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.013, elapsed: 0.431 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.809, system: 0.175, elapsed: 8.462 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.370 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.616, system: 0.458, elapsed: 20.040 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.590, system: 0.788, elapsed: 49.863 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64