Last updated on 2026-01-16 05:51:31 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/229s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.596, system: 0.047, elapsed: 2.061 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.610, system: 0.114, elapsed: 11.566 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.245, system: 0.021, elapsed: 0.266 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.922, system: 0.716, elapsed: 54.591 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.181 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.112, system: 0.923, elapsed: 69.403 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.538, system: 0.035, elapsed: 1.842 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.733, system: 0.100, elapsed: 13.402 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.016, elapsed: 1.032 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.440, system: 0.591, elapsed: 26.462 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.002, elapsed: 0.178 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.676, system: 0.766, elapsed: 43.612 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.542, system: 0.031, elapsed: 1.703 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.613, system: 0.066, elapsed: 12.785 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.315, system: 0.015, elapsed: 1.083 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.772, system: 0.720, elapsed: 58.760 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.007, elapsed: 0.206 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.260, system: 0.342, elapsed: 1.198 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.364, system: 1.219, elapsed: 76.566 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.579, system: 0.041, elapsed: 2.390 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.692, system: 0.061, elapsed: 11.210 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.014, elapsed: 0.335 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.229, system: 0.553, elapsed: 7.008 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.004, elapsed: 0.177 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.945, system: 0.767, elapsed: 11.940 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.563, system: 1.468, elapsed: 33.956 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/243s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.618, system: 0.041, elapsed: 4.782 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.599, system: 0.064, elapsed: 26.652 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.017, elapsed: 0.567 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.270, system: 0.429, elapsed: 12.576 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.005, elapsed: 0.446 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.440, system: 0.578, elapsed: 46.753 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.647, system: 0.050, elapsed: 4.903 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.692, system: 0.091, elapsed: 27.684 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.014, elapsed: 0.583 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.326, system: 0.424, elapsed: 12.205 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.457 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.588, system: 0.603, elapsed: 47.457 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.562, system: 0.029, elapsed: 4.269 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.654, system: 0.104, elapsed: 26.385 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.209, system: 0.016, elapsed: 0.680 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.387, system: 0.433, elapsed: 13.175 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.004, elapsed: 0.465 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.245, system: 0.332, elapsed: 2.198 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.908, system: 0.941, elapsed: 49.076 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.613, system: 0.043, elapsed: 4.506 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.621, system: 0.085, elapsed: 26.259 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.013, elapsed: 0.751 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.281, system: 0.420, elapsed: 16.410 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.549 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.654, system: 0.480, elapsed: 34.164 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.210, system: 1.069, elapsed: 84.816 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64