serocalculator: Estimating Infection Rates from Serological Data

Translates antibody levels measured in cross-sectional population samples into estimates of the frequency with which seroconversions (infections) occur in the sampled populations. Replaces the previous 'seroincidence' package. Methods originally published in Simonsen et al. (2009) <doi:10.1002/sim.3592> and Teunis et al. (2012) <doi:10.1002/sim.5322>, and further developed in subsequent publications by de Graaf et al. (2014) <doi:10.1016/j.epidem.2014.08.002>, Teunis et al. (2016) <doi:10.1016/j.epidem.2016.04.001>, and Teunis et al. (2020) <doi:10.1002/sim.8578>.

Version: 1.0.3
Depends: R (≥ 4.1.0)
Imports: doParallel, dplyr (≥ 1.1.1), foreach, ggplot2, ggpubr, lifecycle, magrittr, mixtools, Rcpp, rlang, rngtools, scales, stats, tibble, tidyr, utils, cli
LinkingTo: Rcpp
Suggests: parallel, knitr, rmarkdown, tidyverse, fs, testthat (≥ 3.0.0), readr, bookdown, ggbeeswarm, DT
Published: 2024-07-21
DOI: 10.32614/CRAN.package.serocalculator
Author: Peter Teunis [aut, cph] (Author of the method and original code.), Kristina Lai [aut, cre], Chris Orwa [aut], Kristen Aiemjoy [aut], Douglas Ezra Morrison [aut]
Maintainer: Kristina Lai <kwlai at ucdavis.edu>
License: GPL-3
URL: https://github.com/UCD-SERG/serocalculator, https://ucd-serg.github.io/serocalculator/
NeedsCompilation: yes
Language: en-US
Materials: README NEWS
CRAN checks: serocalculator results

Documentation:

Reference manual: serocalculator.pdf

Downloads:

Package source: serocalculator_1.0.3.tar.gz
Windows binaries: r-devel: serocalculator_1.0.3.zip, r-release: serocalculator_1.0.3.zip, r-oldrel: serocalculator_1.0.3.zip
macOS binaries: r-release (arm64): serocalculator_1.0.3.tgz, r-oldrel (arm64): serocalculator_1.0.3.tgz, r-release (x86_64): serocalculator_1.0.3.tgz, r-oldrel (x86_64): serocalculator_1.0.3.tgz

Linking:

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