Introduced a unified input data structure for all expression analysis functions.
Removed restrictions on the number of target or reference genes. Weighted Ct values are now calculated from efficiency and Ct values using the geometric mean of the specified reference genes.
Added support for analyzing all genes or selected subsets. The returned object includes the final expression table for all genes as well as per-gene results.
Added publication-ready graphical outputs via the
plotFacto() function for one- to three-factor experimental
designs.
Improved handling of missing values for more robust analyses.