puremoe: Integrated Retrieval and Analysis of 'PubMed', 'NIH', and 'NLM'
Literature Data
Retrieve and analyze biomedical literature from 'PubMed' and
the wider 'NIH'/'NLM' data stack through a single, PMID-centered
interface. A PubMed search resolves to a set of PMIDs, which can be used
to retrieve article metadata and abstracts, author affiliations,
'iCite' citation data and links, 'PubTator3' entity and relation
annotations, and open-access full text from 'PMC'. A local analysis layer
operates on the retrieved tables, supporting corpus expansion through
citation links, citation network construction, sentence-level entity
co-occurrence, inspection of relation evidence, and 'MeSH' descriptor
keyness.
| Version: |
1.1.0 |
| Depends: |
R (≥ 3.5) |
| Imports: |
rentrez, textshape, xml2, data.table, httr, pbapply, jsonlite, rappdirs, textpress, parallel, tools, utils |
| Suggests: |
knitr, rmarkdown, DT, dplyr, testthat (≥ 3.0.0) |
| Published: |
2026-06-24 |
| DOI: |
10.32614/CRAN.package.puremoe |
| Author: |
Jason Timm [aut, cre] |
| Maintainer: |
Jason Timm <JaTimm at salud.unm.edu> |
| BugReports: |
https://github.com/jaytimm/puremoe/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/jaytimm/puremoe,
https://jaytimm.github.io/puremoe/ |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
puremoe results |
Documentation:
Downloads:
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