phytoclass 2.3.1

Enhancements

• Updated min_max.rda using new pigment ratio min/max from Simon Wright.
• Improve “custom-example” vignette to use southern ocean min_max.

phytoclass 2.3.0

This version update removes internal functions that became unused once combined into a single function. The sets of functions include “Conduit”, “Fac_F_RR”, “Minimise_elements” and “Random_neighbor”. ## New features * convergence_figure() was added in simulated_annealing_Prochloro() * Progress bar was added in simulated_annealing_Prochloro() * Cluster() now accepts a row_ids input vector to name each sample * Cluster() exports an assigments item that relates the ID to the cluster * Cluster() checks if data.frame input has a column of strings and removes them prior to clustering

Bug Fixes

• The figure functions would error if the number of colors needed exceeded 11. Now, the figure functions can handle additional colors.
• Cluster() had an issue if given a matrix without rownames and would error, now will convert to data.frame prior to running boxcar normalising

phytoclass 2.2.0

• Add automatic switch to Prochlorococcus function based on dvchl column
• added convergence plot

phytoclass 2.1.0

• performance improvements
• improved documentation
• • continuous integration
• • tests
• improved matrix checks
• improved error messages

phytoclass 2.0.0

phytoclass 1.2.0

phytoclass 1.1.0

phytoclass 0.0.0.9000

• Added a NEWS.md file to track changes to the package.

phytoclass 1.1.0

Breaking changes

New features

We have added a function which allows for chlorophyll derivations for prochlorococcus.

Minor improvements and fixes

We have improved documentation, and relabelled groups, such as ‘Diatom-1’ instead of ‘Diatom-A’.