philentropy: Similarity and Distance Quantification Between Probability Functions
Computes 46 optimized distance and similarity measures for comparing probability functions (Drost (2018) <doi:10.21105/joss.00765>). These comparisons between probability functions have their foundations in a broad range of scientific disciplines from mathematics to ecology. The aim of this package is to provide a core framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.
| Version: | 0.9.0 |
| Depends: | R (≥ 3.1.2) |
| Imports: | Rcpp, KernSmooth, poorman |
| LinkingTo: | Rcpp |
| Suggests: | testthat, knitr, rmarkdown, microbenchmark |
| Published: | 2024-11-12 |
| DOI: | 10.32614/CRAN.package.philentropy |
| Author: | Hajk-Georg Drost 
[aut, cre],
Jakub Nowosad
[ctb] |
| Maintainer: | Hajk-Georg Drost <hajk-georg.drost at tuebingen.mpg.de> |
| BugReports: | https://github.com/drostlab/philentropy/issues |
| License: | GPL-2 |
| URL: | https://drostlab.github.io/philentropy/, https://github.com/drostlab/philentropy |
| NeedsCompilation: | yes |
| Citation: | philentropy citation info |
| Materials: | README NEWS |
| CRAN checks: | philentropy results |
Documentation:
| Reference manual: | philentropy.pdf |
| Vignettes: |
Distances (source) Information Theory (source) Introduction (source) Comparing many probability density functions (source, R code) |
Downloads:
| Package source: | philentropy_0.9.0.tar.gz |
| Windows binaries: | r-devel: philentropy_0.9.0.zip, r-release: philentropy_0.8.0.zip, r-oldrel: philentropy_0.9.0.zip |
| macOS binaries: | r-release (arm64): philentropy_0.8.0.tgz, r-oldrel (arm64): philentropy_0.8.0.tgz, r-release (x86_64): philentropy_0.8.0.tgz, r-oldrel (x86_64): philentropy_0.8.0.tgz |
| Old sources: | philentropy archive |
Reverse dependencies:
| Reverse imports: | biomartr, codez, EcotoneFinder, EnvNJ, GRelevance, iSubGen, jenga, motif, mSigTools, musicatk, naive, noisyr, regional, segen, SemNeT, spooky, supercells, tetragon |
| Reverse suggests: | miaSim, mmb, priorsense, Rfast, tidytof |
Linking:
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