pharmaversesdtm 1.4.0

New Features

Added VISITDY in pc. (#219)
Updated QSTESTCD in qs_ophtha to be consistent with CDISC terminology. Also reduced the number of records for ease of use. (#172)
Added BRTHDTC in dm and dm_metabolic. (#195)
Following Neurological Disease Specific SDTM datasets have been added. (#198, #202, #203)
- dm_neuro
- nv_neuro
- suppnv_neuro
- ag_neuro
- lb_neuro
Updated rs_onco_pcwg3 to correct the misclassification of PDu and to remove the TMRESP records. (#193)
Added lb_onco_pcwg3 dataset which contains PSA measurements for PCWG criteria. (#197)
Added the Lumipulse G pTau217, β-Amyloid 1-42 Plasma and their Ratio in lb_neuro. (#211)

The reference page has been updated to categorize datasets by therapeutic areas. (#204)

Developer Notes

Updated {lintr} configurations to use central configurations from {admiraldev}. (#194)
Generated different sites for the development and released versions of the package. (#207)
Updated the pull request template to include the corrected package website name. (#223)

Developer Notes

Units for eg dataset were updated to be consistent with SDTM guidelines. (#129)
Added following Metabolic specific SDTM datasets: (#136, #139)
- dm_metabolic
- qs_metabolic
- vs_metabolic
- lb_metabolic.
Updated oe_ophtha to include both pre and post-dose IOP. (#134)
Updated ex_vaccine dataset to remove the non-standard CDISC SDTM variables. (#170)
Oncology response data for PCWG3 criteria (rs_onco_pcwg3) was added. (#143)

Removed outdated references to {renv} in the package README. (#113)
Added test short names and test names (xxTESTCD/xxTEST) description in the “Details” section, when available. (#145)

Developer Notes

Ungrouped lb_metabolic prior to export (#152)
Added metatools as a dependency needed for development tasks (#153)
Removed namespaces from function calls in lb_metabolic.R
Removed unnecessary “Documentation Process” section from README.md (#156)
Harmonized code to load the SDTMs using pharmaversesdtm::xx (#157)
Harmonized code using magrittr pipe (#158)
Added back pharmaversesdtm Hex and corresponding alternative text (#159)
Ensured all datasets have populated variables labels (#162)
Changed units of insulin and triglycerides in lb_metabolic (#167)
Fixed typo in tu_onco_recist dataset (#171)
Ensured R files generated by create_sdtms_data.R are compliant with {styler} (#179)

Oncology response data for GCIG criteria (rs_onco_ca125 and supprs_onco_ca125) was added. (#124)
Added variable-by-variable breakdown of dataset within reference pages. (#111)

Developer Notes

Internally re-worked the way reference pages are constructed to automate the process. (#111)

Pediatrics data for anthropometric measures (dm_peds and vs_peds) was added. (#88)
CMENRTPT variable was added to the cm dataset. (#120)
AELOC variable was added to the ae_ophtha dataset. (#110)

Developer Notes

Add URINE records to pc and pp. (#90)
Update PPCAT so that it corresponds to PCTEST. (#91)
Oncology response data for IMWG criteria (rs_onco_imwg and supprs_onco_imwg) was added. (#86)
Update PPSTRESC and PPORRES so they are character. (#102)

Following Vaccine Specific SDTM datasets have been added. (#4)
- ce_vaccine
- dm_vaccine
- ex_vaccine
- face_vaccine
- is_vaccine
- vs_vaccine
- suppce_vaccine
- suppdm_vaccine
- suppex_vaccine
- suppface_vaccine
Oncology response data for iRECIST criteria (rs_onco_irecist) was added. (#32)
get_terms() now expects TERMCHAR instead of TERMNAME in alignment with this {admiral} issue. (#76)

Ophthalmology variants of ex and qs SDTM datasets added. (#15)
Migrate data and function get_terms() from admiral.test. (#1, #49)
Oncology datasets tu_onco_recist, tr_onco_recist, and rs_onco_recist using RECIST 1.1 response criteria. The datasets contain just a few patients. They are intended for vignettes and examples of ADaM datasets creation. (#33)