Last updated on 2025-11-17 05:50:23 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| MetaComp | 4 | 3 | 6 |
Current CRAN status: ERROR: 4, NOTE: 3, OK: 6
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/96s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [34s/83s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 18 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 18 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64