Last updated on 2026-03-13 05:50:12 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 35.77 | 732.99 | 768.76 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 23.37 | 481.27 | 504.64 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 65.00 | 1121.26 | 1186.26 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 60.00 | 1108.36 | 1168.36 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 120.00 | 128.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 40.00 | 543.00 | 583.00 | OK | |
| r-patched-linux-x86_64 | 0.11.0 | 54.64 | 650.15 | 704.79 | OK | |
| r-release-linux-x86_64 | 0.11.0 | 35.43 | 648.08 | 683.51 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.11.0 | 39.00 | 518.00 | 557.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 108.00 | 116.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 25.00 | 416.00 | 441.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 56.00 | 633.00 | 689.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-13 10:33:50.09588: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.096162: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.099333: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.105652: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.119122: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.119247: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.12148: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.127413: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.134271: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.134461: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.138671: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.153821: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.154241: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.1603: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.16043: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.205664: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.221005: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.221634: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.25193: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.252065: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.256575: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.28942: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.29906: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.299325: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.308416: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.387882: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.388987: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.438249: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.438424: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.440783: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.446858: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.454242: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.454408: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.45907: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.474312: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.474742: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.50922: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.50937: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.51178: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.518032: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.531607: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.531786: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.536325: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.551371: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.551802: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.585959: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.586088: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.588426: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.594964: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.606881: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.607064: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.611546: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.626581: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.626977: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.644021: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.64415: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.64641: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.652284: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.662965: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.663131: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.667359: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.6827: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.683095: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.718083: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.718227: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.720447: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.726967: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.739812: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.740008: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.744765: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.760695: embedding
> test_pipeop_isomap.R: 2026-03-13 10:33:50.761099: DONE
> test_pipeop_isomap.R: 2026-03-13 10:33:50.782313: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.782437: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.784801: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.790929: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.810089: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.810211: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.812591: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.818843: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 10:33:50.824609: Isomap START
> test_pipeop_isomap.R: 2026-03-13 10:33:50.824743: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 10:33:50.832289: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 10:33:50.838525: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [256s/201s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-12 20:31:36.49521: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:36.495684: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:36.511806: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:36.535905: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:36.621163: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:36.621425: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:36.653263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:36.682726: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:36.709617: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:36.710447: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:36.733402: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:36.816542: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:36.817696: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:36.853955: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:36.854301: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:36.88008: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:36.952928: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:36.953952: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:37.045163: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:37.045448: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:37.071242: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:37.253466: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:37.430717: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:37.431209: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:37.478839: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:37.777574: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:37.816026: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:38.100362: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:38.100646: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:38.11085: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:38.138818: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:38.201234: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:38.201684: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:38.219006: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:38.289487: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:38.290599: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:38.453087: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:38.454443: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:38.490142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:38.525819: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:38.579412: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:38.579853: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:38.595561: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:38.649396: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:38.650612: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:38.721246: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:38.721525: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:38.732011: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:38.749439: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:38.798894: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:38.799304: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:38.816758: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:38.857302: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:38.859331: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:38.940148: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:38.94056: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:38.953238: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:38.978045: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:39.021666: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:39.022096: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:39.043819: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:39.093777: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:39.105366: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:39.183438: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:39.183734: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:39.199401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:39.217991: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:39.268114: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-12 20:31:39.268525: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:39.286764: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:39.354605: embedding
> test_pipeop_isomap.R: 2026-03-12 20:31:39.355773: DONE
> test_pipeop_isomap.R: 2026-03-12 20:31:39.439275: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:39.439559: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:39.447259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:39.472079: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:39.532521: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:39.532842: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:39.539591: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:39.568919: Classical Scaling
> test_pipeop_isomap.R: 2026-03-12 20:31:39.595568: Isomap START
> test_pipeop_isomap.R: 2026-03-12 20:31:39.596116: constructing knn graph
> test_pipeop_isomap.R: 2026-03-12 20:31:39.608003: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-12 20:31:39.630385: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_smote.R:10:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [241s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-11 18:28:04.175365: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:04.176178: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:04.188588: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:04.205048: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:04.263486: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:04.264245: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:04.277714: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:04.300237: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:04.349298: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:04.350351: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:04.46116: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:04.510659: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:04.512698: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:04.564794: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:04.565557: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:04.586379: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:04.635403: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:04.637263: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:04.787868: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:04.788612: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:05.386019: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:05.50459: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:05.562542: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:05.563532: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:05.604121: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:05.768184: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:05.771669: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:05.906046: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:05.906462: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:05.914161: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:05.928933: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:05.95964: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:05.960236: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:05.974668: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.008937: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:06.010163: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:06.141511: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.141931: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.160363: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.1751: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:06.219394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.219968: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.234155: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.267994: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:06.269134: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:06.338747: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.339169: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.346921: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.361591: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:06.405367: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.405963: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.418908: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.452967: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:06.454145: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:06.524609: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.525026: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.533305: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.548287: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:06.593309: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.593915: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.608615: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.642763: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:06.643942: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:06.718546: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.718984: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.739745: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.754713: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:06.799967: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.800565: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.814807: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.848834: embedding
> test_pipeop_isomap.R: 2026-03-11 18:28:06.850088: DONE
> test_pipeop_isomap.R: 2026-03-11 18:28:06.935783: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:06.936555: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:06.950173: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:06.9726: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:07.105383: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:07.106072: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:07.118879: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:07.140137: Classical Scaling
> test_pipeop_isomap.R: 2026-03-11 18:28:07.171368: Isomap START
> test_pipeop_isomap.R: 2026-03-11 18:28:07.172005: constructing knn graph
> test_pipeop_isomap.R: 2026-03-11 18:28:07.181814: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-11 18:28:07.203582: Classical Scaling
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_learnercv.R:3:3',
'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3',
'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3',
'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3',
'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3',
'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3',
'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3',
'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3',
'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3',
'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3',
'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3',
'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3',
'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3',
'test_pipeop_learnercv.R:827:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64