Last updated on 2026-05-14 06:51:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.2 | 67.93 | 198.58 | 266.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.2 | 90.57 | 144.13 | 234.70 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 97.00 | 342.29 | 439.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 155.00 | 345.80 | 500.80 | OK | |
| r-devel-windows-x86_64 | 2.0.2 | 101.00 | 219.00 | 320.00 | OK | |
| r-patched-linux-x86_64 | 2.0.2 | 70.64 | 186.48 | 257.12 | OK | |
| r-release-linux-x86_64 | 2.0.2 | 71.58 | 189.00 | 260.58 | OK | |
| r-release-macos-arm64 | 2.0.3 | 16.00 | 70.00 | 86.00 | OK | |
| r-release-macos-x86_64 | 2.0.3 | 44.00 | 229.00 | 273.00 | OK | |
| r-release-windows-x86_64 | 2.0.2 | 100.00 | 229.00 | 329.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 13.00 | 64.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.3 | 44.00 | 183.00 | 227.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.2 | 109.00 | 291.00 | 400.00 | OK |
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.3
• Read the guide: run vignette()
• Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and
report issues on https://github.com/immunogenomics/harmony/issues
>
> test_check("harmony")
221exists, retrying for cluster 5 3.22431
244exists, retrying for cluster 25 0.693275
112exists, retrying for cluster 28 2.99683
45exists, retrying for cluster 35 0.95372
108exists, retrying for cluster 41 1.89486
226exists, retrying for cluster 47 3.27435
Saving _problems/test_two_variable-11.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ──────
<std::logic_error/C++Error/error/condition>
Error: inv(): use of LAPACK must be enabled
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1
2. └─harmony:::RunHarmony.default(...)
3. ├─base::tryCatch(...)
4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose)
6. └─harmonyObj$moe_correct_ridge_cpp()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang