Last updated on 2026-10-27 17:54:44 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | 9.67 | 87.42 | 97.09 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 6.55 | 64.20 | 70.75 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 7.00 | 63.71 | 70.71 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 71.47 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.1 | 12.00 | 111.00 | 123.00 | ERROR | |
| r-patched-linux-x86_64 | 2.0.1 | 10.01 | 87.99 | 98.00 | OK | |
| r-release-linux-x86_64 | 2.0.1 | 9.29 | 84.57 | 93.86 | ERROR | |
| r-release-macos-arm64 | 2.0.1 | 2.00 | 28.00 | 30.00 | OK | |
| r-release-macos-x86_64 | 2.0.1 | 7.00 | 103.00 | 110.00 | OK | |
| r-release-windows-x86_64 | 2.0.1 | 10.00 | 107.00 | 117.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.0.1 | OK | ||||
| r-oldrel-macos-x86_64 | 2.0.1 | 6.00 | 87.00 | 93.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.1 | 14.00 | 137.00 | 151.00 | OK |
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Analyzing_rates_of_evolution.Rmd’ using rmarkdown
Quitting from Analyzing_rates_of_evolution.Rmd:210-214 [unnamed-chunk-24]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `model.frame.default()`:
! invalid type (closure) for variable '(weights)'
---
Backtrace:
▆
1. └─evolvability::rate_gls(...)
2. └─evolvability::Almer(...)
3. ├─lme4::lFormula(...)
4. │ └─lme4:::mkFormula(...)
5. │ └─base::eval(mf, parent_env)
6. │ └─base::eval(mf, parent_env)
7. ├─stats::model.frame(...)
8. └─stats::model.frame.default(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Analyzing_rates_of_evolution.Rmd' failed with diagnostics:
invalid type (closure) for variable '(weights)'
--- failed re-building ‘Analyzing_rates_of_evolution.Rmd’
--- re-building ‘Phylogenetic_mixed_model.Rmd’ using rmarkdown
Quitting from Phylogenetic_mixed_model.Rmd:57-60 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `model.frame.default()`:
! invalid type (closure) for variable '(weights)'
---
Backtrace:
▆
1. └─evolvability::Almer(y ~ 1 + (1 | species), data = dt, A = list(species = A))
2. ├─lme4::lFormula(...)
3. │ └─lme4:::mkFormula(...)
4. │ └─base::eval(mf, parent_env)
5. │ └─base::eval(mf, parent_env)
6. ├─stats::model.frame(...)
7. └─stats::model.frame.default(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Phylogenetic_mixed_model.Rmd' failed with diagnostics:
invalid type (closure) for variable '(weights)'
--- failed re-building ‘Phylogenetic_mixed_model.Rmd’
SUMMARY: processing the following files failed:
‘Analyzing_rates_of_evolution.Rmd’ ‘Phylogenetic_mixed_model.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Analyzing_rates_of_evolution.Rmd’ using rmarkdown
Quitting from Analyzing_rates_of_evolution.Rmd:210-214 [unnamed-chunk-24]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `model.frame.default()`:
! invalid type (closure) for variable '(weights)'
---
Backtrace:
▆
1. └─evolvability::rate_gls(...)
2. └─evolvability::Almer(...)
3. ├─lme4::lFormula(...)
4. │ └─lme4:::mkFormula(...)
5. │ └─base::eval(mf, parent_env)
6. │ └─base::eval(mf, parent_env)
7. ├─stats::model.frame(...)
8. └─stats::model.frame.default(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Analyzing_rates_of_evolution.Rmd' failed with diagnostics:
invalid type (closure) for variable '(weights)'
--- failed re-building ‘Analyzing_rates_of_evolution.Rmd’
--- re-building ‘Phylogenetic_mixed_model.Rmd’ using rmarkdown
Quitting from Phylogenetic_mixed_model.Rmd:57-60 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `model.frame.default()`:
! invalid type (closure) for variable '(weights)'
---
Backtrace:
▆
1. └─evolvability::Almer(y ~ 1 + (1 | species), data = dt, A = list(species = A))
2. ├─lme4::lFormula(...)
3. │ └─lme4:::mkFormula(...)
4. │ └─base::eval(mf, parent_env)
5. │ └─base::eval(mf, parent_env)
6. ├─stats::model.frame(...)
7. └─stats::model.frame.default(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Phylogenetic_mixed_model.Rmd' failed with diagnostics:
invalid type (closure) for variable '(weights)'
--- failed re-building ‘Phylogenetic_mixed_model.Rmd’
SUMMARY: processing the following files failed:
‘Analyzing_rates_of_evolution.Rmd’ ‘Phylogenetic_mixed_model.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64