Last updated on 2026-08-05 09:50:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 1.74 | 47.07 | 48.81 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 1.85 | 39.95 | 41.80 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 52.93 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 34.35 | OK | |||
| r-devel-windows-x86_64 | 0.1.0 | 4.00 | 61.00 | 65.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 2.29 | 45.41 | 47.70 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 2.25 | 42.61 | 44.86 | OK | |
| r-release-macos-arm64 | 0.1.0 | 1.00 | 13.00 | 14.00 | OK | |
| r-release-macos-x86_64 | 0.1.0 | 2.00 | 42.00 | 44.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 5.00 | 62.00 | 67.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | 1.00 | 18.00 | 19.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.0 | 2.00 | 67.00 | 69.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 5.00 | 76.00 | 81.00 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘duckh3-Ex.R’ failed
The error most likely occurred in:
> ### Name: ddbh3_get_child_pos
> ### Title: Get the position of an H3 cell within its parent
> ### Aliases: ddbh3_get_child_pos
>
> ### ** Examples
>
> ## Load needed packages
> library(duckh3)
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
>
> ## Setup the default connection with h3 and spatial extensions
> ## This is a mandatory step to use duckh3 functions
> ddbh3_default_conn(threads = 1)
duckdb is storing downloaded extensions and secrets under ~/.duckdb:
ℹ /data/gannet/ripley/.duckdb
This persists across sessions and is shared with the DuckDB CLI and other clients.
ℹ Run duckdb(shared_home = FALSE) to use a temporary directory instead.
ℹ See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
• Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
• INSTALL/LOAD of an extension will error, and automatic extension loading is off.
ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
ℹ See ?duckdb for details.
Error in `ddbs_install()`:
! Failed to install the spatial extension.
✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.
ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this
may crash R on a Linux build not compiled with libstdc++; see
https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ
Context: load_extension
✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this
driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable
it (this may crash R on a Linux build not compiled with libstdc++; see
https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ
Context: load_extension
ℹ It might not be available for this version of DuckDB, or the install location
may not be writable.
ℹ Check that the extension name is correct:
<https://duckdb.org/docs/extensions/overview>
Backtrace:
▆
1. └─duckh3::ddbh3_default_conn(threads = 1)
2. └─duckspatial::ddbs_create_conn(...)
3. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(duckh3)
>
> test_check("duckh3")
duckdb is storing downloaded extensions and secrets under ~/.duckdb:
ℹ /data/gannet/ripley/.duckdb
This persists across sessions and is shared with the DuckDB CLI and other clients.
ℹ Run duckdb(shared_home = FALSE) to use a temporary directory instead.
ℹ See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
• Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
• INSTALL/LOAD of an extension will error, and automatic extension loading is off.
ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
ℹ See ?duckdb for details.
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error in `ddbs_install()`:
! Failed to install the spatial extension.
✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.
ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this
may crash R on a Linux build not compiled with libstdc++; see
https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ
Context: load_extension
✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this
driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable
it (this may crash R on a Linux build not compiled with libstdc++; see
https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ
Context: load_extension
ℹ It might not be available for this version of DuckDB, or the install location
may not be writable.
ℹ Check that the extension name is correct:
<https://duckdb.org/docs/extensions/overview>
Backtrace:
▆
1. └─testthat::test_check("duckh3")
2. └─testthat::test_dir(...)
3. └─testthat:::test_files(...)
4. └─testthat:::test_files_serial(...)
5. └─testthat:::test_files_setup_state(...)
6. └─testthat::source_test_setup(".", env)
7. └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. └─base::lapply(...)
9. └─testthat (local) FUN(X[[i]], ...)
10. └─testthat::source_file(...)
11. ├─base::withCallingHandlers(...)
12. └─base::eval(exprs, env)
13. └─base::eval(exprs, env)
14. └─duckh3::ddbh3_default_conn() at ./setup.R:12:1
15. └─duckspatial::ddbs_create_conn(...)
16. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang