Last updated on 2026-10-05 19:50:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2.1 | 44.67 | 462.85 | 507.52 | OK | --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 2.2.1 | 27.60 | 304.21 | 331.81 | ERROR | --no-vignettes |
| r-devel-linux-x86_64-fedora-clang | 2.2.1 | 32.00 | 320.03 | 352.03 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.2.1 | 29.00 | 311.74 | 340.74 | ERROR | |
| r-devel-windows-x86_64 | 2.2.1 | 54.00 | 596.00 | 650.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 2.2.1 | 53.48 | 446.75 | 500.23 | OK | --no-vignettes |
| r-release-linux-x86_64 | 2.2.1 | OK | --no-vignettes | |||
| r-release-macos-arm64 | 2.2.1 | 10.00 | 111.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 2.2.1 | 26.00 | 562.00 | 588.00 | OK | |
| r-release-windows-x86_64 | 2.2.1 | 52.00 | 515.00 | 567.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 2.2.1 | 10.00 | 110.00 | 120.00 | OK | |
| r-oldrel-macos-x86_64 | 2.2.1 | 33.00 | 998.00 | 1031.00 | OK | |
| r-oldrel-windows-x86_64 | 2.2.1 | 76.00 | 559.00 | 635.00 | OK | --no-vignettes |
Version: 2.2.1
Flags: --no-vignettes
Check: tests
Result: ERROR
Running ‘test-package-load.R’ [3s/3s]
Running ‘testthat.R’ [75s/93s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> pkg_name <- "crmPack"
> library(pkg_name, character.only = TRUE)
Loading required package: ggplot2
Registered S3 method overwritten by 'crmPack':
method from
print.gtable gtable
Type crmPackHelp() to open help browser
Type crmPackExample() to open example
> testthat::test_check(pkg_name)
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used best guess cohort indices!
Used default patient IDs!
Used best guess cohort indices!
Saving _problems/test-HierarchicalModel-1144.R
Saving _problems/test-TwoDrugsCombo-class-248.R
Saving _problems/test-TwoDrugsCombo-class-249.R
Saving _problems/test-TwoDrugsCombo-class-266.R
Saving _problems/test-TwoDrugsCombo-class-267.R
Saving _problems/test-TwoDrugsCombo-class-282.R
Saving _problems/test-TwoDrugsCombo-class-283.R
Saving _problems/test-TwoDrugsCombo-class-282.R
Saving _problems/test-TwoDrugsCombo-class-283.R
Saving _problems/test-TwoDrugsCombo-class-295.R
Saving _problems/test-TwoDrugsCombo-class-296.R
Saving _problems/test-TwoDrugsCombo-class-307.R
Saving _problems/test-TwoDrugsCombo-class-308.R
Saving _problems/test-TwoDrugsCombo-class-319.R
Saving _problems/test-TwoDrugsCombo-class-320.R
NULL
[ FAIL 15 | WARN 0 | SKIP 144 | PASS 3867 ]
══ Skipped tests (144) ═════════════════════════════════════════════════════════
• On CRAN (131): 'test-CrmPackClass-class.R:33:3',
'test-CrmPackClass-methods.R:33:3', 'test-CrmPackClass-methods.R:93:3',
'test-Data-methods.R:3:1', 'test-Data-methods.R:27:1',
'test-Data-methods.R:34:1', 'test-Data-methods.R:41:1',
'test-Data-methods.R:51:1', 'test-Data-methods.R:63:1',
'test-Data-methods.R:70:1', 'test-Data-methods.R:82:1',
'test-Data-methods.R:89:1', 'test-Data-methods.R:101:1',
'test-Data-methods.R:108:1', 'test-Data-methods.R:115:1',
'test-Design-methods.R:3:1', 'test-HierarchicalModel.R:35:1',
'test-HierarchicalModel.R:41:1', 'test-HierarchicalModel.R:479:1',
'test-HierarchicalModel.R:1103:1', 'test-Model-class.R:81:1',
'test-Model-class.R:90:1', 'test-Model-class.R:127:1',
'test-Model-class.R:136:1', 'test-Model-class.R:173:1',
'test-Model-class.R:182:1', 'test-Model-class.R:219:1',
'test-Model-class.R:228:1', 'test-Model-class.R:264:1',
'test-Model-class.R:273:1', 'test-Model-class.R:306:1',
'test-Model-class.R:315:1', 'test-Model-class.R:348:1',
'test-Model-class.R:357:1', 'test-Model-class.R:402:1',
'test-Model-class.R:411:1', 'test-Model-class.R:456:1',
'test-Model-class.R:465:1', 'test-Model-class.R:520:1',
'test-Model-class.R:536:1', 'test-Model-class.R:583:1',
'test-Model-class.R:592:1', 'test-Model-class.R:645:1',
'test-Model-class.R:661:1', 'test-Model-class.R:677:1',
'test-Model-class.R:693:1', 'test-Model-class.R:713:1',
'test-Model-class.R:729:1', 'test-Model-class.R:745:1',
'test-Model-class.R:761:1', 'test-Model-class.R:852:1',
'test-Model-class.R:868:1', 'test-Model-class.R:907:1',
'test-Model-class.R:923:1', 'test-Model-class.R:971:1',
'test-Model-class.R:987:1', 'test-Model-class.R:1003:1',
'test-Model-class.R:1019:1', 'test-Model-class.R:1062:1',
'test-Model-class.R:1071:1', 'test-Model-class.R:1096:1',
'test-Model-class.R:1105:1', 'test-Model-class.R:1140:1',
'test-Model-class.R:1148:1', 'test-Model-class.R:1156:1',
'test-Model-class.R:1164:1', 'test-Model-class.R:1217:1',
'test-Model-class.R:1226:1', 'test-Model-class.R:1263:1',
'test-Model-class.R:1272:1', 'test-Model-class.R:1281:1',
'test-Model-class.R:1290:1', 'test-Model-class.R:1299:1',
'test-Model-class.R:1308:1', 'test-Model-class.R:1345:1',
'test-Model-class.R:1354:1', 'test-Model-class.R:1363:1',
'test-Model-class.R:1372:1', 'test-Model-class.R:1381:1',
'test-Model-class.R:1390:1', 'test-Model-class.R:1486:1',
'test-Model-class.R:1495:1', 'test-Model-class.R:1610:1',
'test-Model-class.R:1619:1', 'test-Model-class.R:1675:1',
'test-Model-class.R:1684:1', 'test-Model-methods.R:3:1',
'test-Model-methods.R:2767:1', 'test-Model-methods.R:2775:1',
'test-Model-validity.R:126:1', 'test-Model-validity.R:223:1',
'test-Model-validity.R:354:1', 'test-Model-validity.R:465:1',
'test-Model-validity.R:473:1', 'test-Model-validity.R:482:1',
'test-Model-validity.R:503:1', 'test-Model-validity.R:513:1',
'test-Model-validity.R:533:1', 'test-Model-validity.R:547:1',
'test-Model-validity.R:880:1', 'test-Model-validity.R:898:1',
'test-Simulations-methods.R:3:1', 'test-fromQuantiles.R:178:3',
'test-fromQuantiles.R:225:3', 'test-fromQuantiles.R:249:3',
'test-fromQuantiles.R:294:3', 'test-fromQuantiles.R:315:3',
'test-fromQuantiles.R:335:3', 'test-helpers-simulations.R:1:1',
'test-helpers.R:69:1', 'test-helpers.R:81:1', 'test-helpers.R:96:1',
'test-helpers.R:835:1', 'test-helpers.R:843:1', 'test-helpers_data.R:1:1',
'test-helpers_jags.R:254:1', 'test-helpers_jags.R:265:1',
'test-helpers_knitr_GeneralModel.R:1:1',
'test-helpers_knitr_NextBest.R:318:1', 'test-helpers_rules.R:250:1',
'test-helpers_rules.R:297:1', 'test-helpers_rules.R:359:1',
'test-helpers_rules.R:402:1', 'test-helpers_rules.R:418:1',
'test-helpers_rules.R:436:1', 'test-helpers_rules.R:456:1',
'test-helpers_rules.R:478:1', 'test-helpers_rules.R:499:1',
'test-helpers_rules.R:522:1', 'test-helpers_rules.R:537:1',
'test-sas-results-part-1.R:100:3'
• On CRAN, but not on CI (13): 'test-Design-methods.R:7:1',
'test-HierarchicalDesign-methods.R:4:1', 'test-Rules-methods.R:1:1',
'test-Samples-methods.R:1:1', 'test-Simulations-methods.R:7:1',
'test-helpers_knitr.R:1:1', 'test-sas-results-part-1.R:4:3',
'test-sas-results-part-1.R:197:3', 'test-sas-results-part-1.R:303:3',
'test-sas-results-part-2.R:4:3', 'test-sas-results-part-2.R:127:3',
'test-sas-results-part-2.R:250:3', 'test-sas-results-part-2.R:373:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-HierarchicalModel.R:1144:3'): hierarchical mcmc runs and returns expected sample structure ──
Expected `dim(result@data$alpha0_my_combo)` to equal `c(20L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:248:3'): MCMC runs for TwoDrugsCombo model ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:249:3'): MCMC runs for TwoDrugsCombo model ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:266:3'): MCMC runs for TwoDrugsCombo after a single combo patient with DLT ──
Expected `dim(result@data$alpha0)` to equal `c(10L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:267:3'): MCMC runs for TwoDrugsCombo after a single combo patient with DLT ──
Expected `dim(result@data$alpha1)` to equal `c(10L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:282:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:283:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:282:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:283:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:295:3'): MCMC runs for TwoDrugsCombo without alpha or ref_dose ──
Expected `ncol(result@data$beta0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:296:3'): MCMC runs for TwoDrugsCombo without alpha or ref_dose ──
Expected `ncol(result@data$beta1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:307:3'): MCMC runs for TwoDrugsCombo model with empty data (i.e. prior) ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:308:3'): MCMC runs for TwoDrugsCombo model with empty data (i.e. prior) ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:319:3'): MCMC runs also when LogisticLogNormalSub models are used inside ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:320:3'): MCMC runs also when LogisticLogNormalSub models are used inside ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
[ FAIL 15 | WARN 0 | SKIP 144 | PASS 3867 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2.1
Check: tests
Result: ERROR
Running ‘test-package-load.R’
Running ‘testthat.R’ [74s/75s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> pkg_name <- "crmPack"
> library(pkg_name, character.only = TRUE)
Loading required package: ggplot2
Registered S3 method overwritten by 'crmPack':
method from
print.gtable gtable
Type crmPackHelp() to open help browser
Type crmPackExample() to open example
> testthat::test_check(pkg_name)
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used best guess cohort indices!
Used default patient IDs!
Used best guess cohort indices!
Saving _problems/test-HierarchicalModel-1144.R
Saving _problems/test-TwoDrugsCombo-class-248.R
Saving _problems/test-TwoDrugsCombo-class-249.R
Saving _problems/test-TwoDrugsCombo-class-266.R
Saving _problems/test-TwoDrugsCombo-class-267.R
Saving _problems/test-TwoDrugsCombo-class-282.R
Saving _problems/test-TwoDrugsCombo-class-283.R
Saving _problems/test-TwoDrugsCombo-class-282.R
Saving _problems/test-TwoDrugsCombo-class-283.R
Saving _problems/test-TwoDrugsCombo-class-295.R
Saving _problems/test-TwoDrugsCombo-class-296.R
Saving _problems/test-TwoDrugsCombo-class-307.R
Saving _problems/test-TwoDrugsCombo-class-308.R
Saving _problems/test-TwoDrugsCombo-class-319.R
Saving _problems/test-TwoDrugsCombo-class-320.R
NULL
[ FAIL 15 | WARN 0 | SKIP 144 | PASS 3867 ]
══ Skipped tests (144) ═════════════════════════════════════════════════════════
• On CRAN (131): 'test-CrmPackClass-class.R:33:3',
'test-CrmPackClass-methods.R:33:3', 'test-CrmPackClass-methods.R:93:3',
'test-Data-methods.R:3:1', 'test-Data-methods.R:27:1',
'test-Data-methods.R:34:1', 'test-Data-methods.R:41:1',
'test-Data-methods.R:51:1', 'test-Data-methods.R:63:1',
'test-Data-methods.R:70:1', 'test-Data-methods.R:82:1',
'test-Data-methods.R:89:1', 'test-Data-methods.R:101:1',
'test-Data-methods.R:108:1', 'test-Data-methods.R:115:1',
'test-Design-methods.R:3:1', 'test-HierarchicalModel.R:35:1',
'test-HierarchicalModel.R:41:1', 'test-HierarchicalModel.R:479:1',
'test-HierarchicalModel.R:1103:1', 'test-Model-class.R:81:1',
'test-Model-class.R:90:1', 'test-Model-class.R:127:1',
'test-Model-class.R:136:1', 'test-Model-class.R:173:1',
'test-Model-class.R:182:1', 'test-Model-class.R:219:1',
'test-Model-class.R:228:1', 'test-Model-class.R:264:1',
'test-Model-class.R:273:1', 'test-Model-class.R:306:1',
'test-Model-class.R:315:1', 'test-Model-class.R:348:1',
'test-Model-class.R:357:1', 'test-Model-class.R:402:1',
'test-Model-class.R:411:1', 'test-Model-class.R:456:1',
'test-Model-class.R:465:1', 'test-Model-class.R:520:1',
'test-Model-class.R:536:1', 'test-Model-class.R:583:1',
'test-Model-class.R:592:1', 'test-Model-class.R:645:1',
'test-Model-class.R:661:1', 'test-Model-class.R:677:1',
'test-Model-class.R:693:1', 'test-Model-class.R:713:1',
'test-Model-class.R:729:1', 'test-Model-class.R:745:1',
'test-Model-class.R:761:1', 'test-Model-class.R:852:1',
'test-Model-class.R:868:1', 'test-Model-class.R:907:1',
'test-Model-class.R:923:1', 'test-Model-class.R:971:1',
'test-Model-class.R:987:1', 'test-Model-class.R:1003:1',
'test-Model-class.R:1019:1', 'test-Model-class.R:1062:1',
'test-Model-class.R:1071:1', 'test-Model-class.R:1096:1',
'test-Model-class.R:1105:1', 'test-Model-class.R:1140:1',
'test-Model-class.R:1148:1', 'test-Model-class.R:1156:1',
'test-Model-class.R:1164:1', 'test-Model-class.R:1217:1',
'test-Model-class.R:1226:1', 'test-Model-class.R:1263:1',
'test-Model-class.R:1272:1', 'test-Model-class.R:1281:1',
'test-Model-class.R:1290:1', 'test-Model-class.R:1299:1',
'test-Model-class.R:1308:1', 'test-Model-class.R:1345:1',
'test-Model-class.R:1354:1', 'test-Model-class.R:1363:1',
'test-Model-class.R:1372:1', 'test-Model-class.R:1381:1',
'test-Model-class.R:1390:1', 'test-Model-class.R:1486:1',
'test-Model-class.R:1495:1', 'test-Model-class.R:1610:1',
'test-Model-class.R:1619:1', 'test-Model-class.R:1675:1',
'test-Model-class.R:1684:1', 'test-Model-methods.R:3:1',
'test-Model-methods.R:2767:1', 'test-Model-methods.R:2775:1',
'test-Model-validity.R:126:1', 'test-Model-validity.R:223:1',
'test-Model-validity.R:354:1', 'test-Model-validity.R:465:1',
'test-Model-validity.R:473:1', 'test-Model-validity.R:482:1',
'test-Model-validity.R:503:1', 'test-Model-validity.R:513:1',
'test-Model-validity.R:533:1', 'test-Model-validity.R:547:1',
'test-Model-validity.R:880:1', 'test-Model-validity.R:898:1',
'test-Simulations-methods.R:3:1', 'test-fromQuantiles.R:178:3',
'test-fromQuantiles.R:225:3', 'test-fromQuantiles.R:249:3',
'test-fromQuantiles.R:294:3', 'test-fromQuantiles.R:315:3',
'test-fromQuantiles.R:335:3', 'test-helpers-simulations.R:1:1',
'test-helpers.R:69:1', 'test-helpers.R:81:1', 'test-helpers.R:96:1',
'test-helpers.R:835:1', 'test-helpers.R:843:1', 'test-helpers_data.R:1:1',
'test-helpers_jags.R:254:1', 'test-helpers_jags.R:265:1',
'test-helpers_knitr_GeneralModel.R:1:1',
'test-helpers_knitr_NextBest.R:318:1', 'test-helpers_rules.R:250:1',
'test-helpers_rules.R:297:1', 'test-helpers_rules.R:359:1',
'test-helpers_rules.R:402:1', 'test-helpers_rules.R:418:1',
'test-helpers_rules.R:436:1', 'test-helpers_rules.R:456:1',
'test-helpers_rules.R:478:1', 'test-helpers_rules.R:499:1',
'test-helpers_rules.R:522:1', 'test-helpers_rules.R:537:1',
'test-sas-results-part-1.R:100:3'
• On CRAN, but not on CI (13): 'test-Design-methods.R:7:1',
'test-HierarchicalDesign-methods.R:4:1', 'test-Rules-methods.R:1:1',
'test-Samples-methods.R:1:1', 'test-Simulations-methods.R:7:1',
'test-helpers_knitr.R:1:1', 'test-sas-results-part-1.R:4:3',
'test-sas-results-part-1.R:197:3', 'test-sas-results-part-1.R:303:3',
'test-sas-results-part-2.R:4:3', 'test-sas-results-part-2.R:127:3',
'test-sas-results-part-2.R:250:3', 'test-sas-results-part-2.R:373:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-HierarchicalModel.R:1144:3'): hierarchical mcmc runs and returns expected sample structure ──
Expected `dim(result@data$alpha0_my_combo)` to equal `c(20L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:248:3'): MCMC runs for TwoDrugsCombo model ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:249:3'): MCMC runs for TwoDrugsCombo model ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:266:3'): MCMC runs for TwoDrugsCombo after a single combo patient with DLT ──
Expected `dim(result@data$alpha0)` to equal `c(10L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:267:3'): MCMC runs for TwoDrugsCombo after a single combo patient with DLT ──
Expected `dim(result@data$alpha1)` to equal `c(10L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:282:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:283:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:282:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:283:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:295:3'): MCMC runs for TwoDrugsCombo without alpha or ref_dose ──
Expected `ncol(result@data$beta0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:296:3'): MCMC runs for TwoDrugsCombo without alpha or ref_dose ──
Expected `ncol(result@data$beta1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:307:3'): MCMC runs for TwoDrugsCombo model with empty data (i.e. prior) ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:308:3'): MCMC runs for TwoDrugsCombo model with empty data (i.e. prior) ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:319:3'): MCMC runs also when LogisticLogNormalSub models are used inside ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:320:3'): MCMC runs also when LogisticLogNormalSub models are used inside ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
[ FAIL 15 | WARN 0 | SKIP 144 | PASS 3867 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.2.1
Check: tests
Result: ERROR
Running ‘test-package-load.R’
Running ‘testthat.R’ [68s/75s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> pkg_name <- "crmPack"
> library(pkg_name, character.only = TRUE)
Loading required package: ggplot2
Registered S3 method overwritten by 'crmPack':
method from
print.gtable gtable
Type crmPackHelp() to open help browser
Type crmPackExample() to open example
> testthat::test_check(pkg_name)
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used default patient IDs!
Used best guess cohort indices!
Used default patient IDs!
Used best guess cohort indices!
Saving _problems/test-HierarchicalModel-1144.R
Saving _problems/test-TwoDrugsCombo-class-248.R
Saving _problems/test-TwoDrugsCombo-class-249.R
Saving _problems/test-TwoDrugsCombo-class-266.R
Saving _problems/test-TwoDrugsCombo-class-267.R
Saving _problems/test-TwoDrugsCombo-class-282.R
Saving _problems/test-TwoDrugsCombo-class-283.R
Saving _problems/test-TwoDrugsCombo-class-282.R
Saving _problems/test-TwoDrugsCombo-class-283.R
Saving _problems/test-TwoDrugsCombo-class-295.R
Saving _problems/test-TwoDrugsCombo-class-296.R
Saving _problems/test-TwoDrugsCombo-class-307.R
Saving _problems/test-TwoDrugsCombo-class-308.R
Saving _problems/test-TwoDrugsCombo-class-319.R
Saving _problems/test-TwoDrugsCombo-class-320.R
NULL
[ FAIL 15 | WARN 0 | SKIP 144 | PASS 3867 ]
══ Skipped tests (144) ═════════════════════════════════════════════════════════
• On CRAN (131): 'test-CrmPackClass-class.R:33:3',
'test-CrmPackClass-methods.R:33:3', 'test-CrmPackClass-methods.R:93:3',
'test-Data-methods.R:3:1', 'test-Data-methods.R:27:1',
'test-Data-methods.R:34:1', 'test-Data-methods.R:41:1',
'test-Data-methods.R:51:1', 'test-Data-methods.R:63:1',
'test-Data-methods.R:70:1', 'test-Data-methods.R:82:1',
'test-Data-methods.R:89:1', 'test-Data-methods.R:101:1',
'test-Data-methods.R:108:1', 'test-Data-methods.R:115:1',
'test-Design-methods.R:3:1', 'test-HierarchicalModel.R:35:1',
'test-HierarchicalModel.R:41:1', 'test-HierarchicalModel.R:479:1',
'test-HierarchicalModel.R:1103:1', 'test-Model-class.R:81:1',
'test-Model-class.R:90:1', 'test-Model-class.R:127:1',
'test-Model-class.R:136:1', 'test-Model-class.R:173:1',
'test-Model-class.R:182:1', 'test-Model-class.R:219:1',
'test-Model-class.R:228:1', 'test-Model-class.R:264:1',
'test-Model-class.R:273:1', 'test-Model-class.R:306:1',
'test-Model-class.R:315:1', 'test-Model-class.R:348:1',
'test-Model-class.R:357:1', 'test-Model-class.R:402:1',
'test-Model-class.R:411:1', 'test-Model-class.R:456:1',
'test-Model-class.R:465:1', 'test-Model-class.R:520:1',
'test-Model-class.R:536:1', 'test-Model-class.R:583:1',
'test-Model-class.R:592:1', 'test-Model-class.R:645:1',
'test-Model-class.R:661:1', 'test-Model-class.R:677:1',
'test-Model-class.R:693:1', 'test-Model-class.R:713:1',
'test-Model-class.R:729:1', 'test-Model-class.R:745:1',
'test-Model-class.R:761:1', 'test-Model-class.R:852:1',
'test-Model-class.R:868:1', 'test-Model-class.R:907:1',
'test-Model-class.R:923:1', 'test-Model-class.R:971:1',
'test-Model-class.R:987:1', 'test-Model-class.R:1003:1',
'test-Model-class.R:1019:1', 'test-Model-class.R:1062:1',
'test-Model-class.R:1071:1', 'test-Model-class.R:1096:1',
'test-Model-class.R:1105:1', 'test-Model-class.R:1140:1',
'test-Model-class.R:1148:1', 'test-Model-class.R:1156:1',
'test-Model-class.R:1164:1', 'test-Model-class.R:1217:1',
'test-Model-class.R:1226:1', 'test-Model-class.R:1263:1',
'test-Model-class.R:1272:1', 'test-Model-class.R:1281:1',
'test-Model-class.R:1290:1', 'test-Model-class.R:1299:1',
'test-Model-class.R:1308:1', 'test-Model-class.R:1345:1',
'test-Model-class.R:1354:1', 'test-Model-class.R:1363:1',
'test-Model-class.R:1372:1', 'test-Model-class.R:1381:1',
'test-Model-class.R:1390:1', 'test-Model-class.R:1486:1',
'test-Model-class.R:1495:1', 'test-Model-class.R:1610:1',
'test-Model-class.R:1619:1', 'test-Model-class.R:1675:1',
'test-Model-class.R:1684:1', 'test-Model-methods.R:3:1',
'test-Model-methods.R:2767:1', 'test-Model-methods.R:2775:1',
'test-Model-validity.R:126:1', 'test-Model-validity.R:223:1',
'test-Model-validity.R:354:1', 'test-Model-validity.R:465:1',
'test-Model-validity.R:473:1', 'test-Model-validity.R:482:1',
'test-Model-validity.R:503:1', 'test-Model-validity.R:513:1',
'test-Model-validity.R:533:1', 'test-Model-validity.R:547:1',
'test-Model-validity.R:880:1', 'test-Model-validity.R:898:1',
'test-Simulations-methods.R:3:1', 'test-fromQuantiles.R:178:3',
'test-fromQuantiles.R:225:3', 'test-fromQuantiles.R:249:3',
'test-fromQuantiles.R:294:3', 'test-fromQuantiles.R:315:3',
'test-fromQuantiles.R:335:3', 'test-helpers-simulations.R:1:1',
'test-helpers.R:69:1', 'test-helpers.R:81:1', 'test-helpers.R:96:1',
'test-helpers.R:835:1', 'test-helpers.R:843:1', 'test-helpers_data.R:1:1',
'test-helpers_jags.R:254:1', 'test-helpers_jags.R:265:1',
'test-helpers_knitr_GeneralModel.R:1:1',
'test-helpers_knitr_NextBest.R:318:1', 'test-helpers_rules.R:250:1',
'test-helpers_rules.R:297:1', 'test-helpers_rules.R:359:1',
'test-helpers_rules.R:402:1', 'test-helpers_rules.R:418:1',
'test-helpers_rules.R:436:1', 'test-helpers_rules.R:456:1',
'test-helpers_rules.R:478:1', 'test-helpers_rules.R:499:1',
'test-helpers_rules.R:522:1', 'test-helpers_rules.R:537:1',
'test-sas-results-part-1.R:100:3'
• On CRAN, but not on CI (13): 'test-Design-methods.R:7:1',
'test-HierarchicalDesign-methods.R:4:1', 'test-Rules-methods.R:1:1',
'test-Samples-methods.R:1:1', 'test-Simulations-methods.R:7:1',
'test-helpers_knitr.R:1:1', 'test-sas-results-part-1.R:4:3',
'test-sas-results-part-1.R:197:3', 'test-sas-results-part-1.R:303:3',
'test-sas-results-part-2.R:4:3', 'test-sas-results-part-2.R:127:3',
'test-sas-results-part-2.R:250:3', 'test-sas-results-part-2.R:373:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-HierarchicalModel.R:1144:3'): hierarchical mcmc runs and returns expected sample structure ──
Expected `dim(result@data$alpha0_my_combo)` to equal `c(20L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:248:3'): MCMC runs for TwoDrugsCombo model ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:249:3'): MCMC runs for TwoDrugsCombo model ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:266:3'): MCMC runs for TwoDrugsCombo after a single combo patient with DLT ──
Expected `dim(result@data$alpha0)` to equal `c(10L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:267:3'): MCMC runs for TwoDrugsCombo after a single combo patient with DLT ──
Expected `dim(result@data$alpha1)` to equal `c(10L, 2L)`.
Differences:
`names(actual)` is a character vector ('iteration', '')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:282:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:283:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:282:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:283:5'): MCMC runs for TwoDrugsCombo with mixture agents ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:295:3'): MCMC runs for TwoDrugsCombo without alpha or ref_dose ──
Expected `ncol(result@data$beta0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:296:3'): MCMC runs for TwoDrugsCombo without alpha or ref_dose ──
Expected `ncol(result@data$beta1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:307:3'): MCMC runs for TwoDrugsCombo model with empty data (i.e. prior) ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:308:3'): MCMC runs for TwoDrugsCombo model with empty data (i.e. prior) ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:319:3'): MCMC runs also when LogisticLogNormalSub models are used inside ──
Expected `ncol(result@data$alpha0)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
── Failure ('test-TwoDrugsCombo-class.R:320:3'): MCMC runs also when LogisticLogNormalSub models are used inside ──
Expected `ncol(result@data$alpha1)` to equal 2L.
Differences:
`names(actual)` is a character vector ('')
`names(expected)` is absent
[ FAIL 15 | WARN 0 | SKIP 144 | PASS 3867 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc