CRAN Package Check Results for Maintainer ‘Caspar J van Lissa <c.j.vanlissa at tilburguniversity.edu>’

Last updated on 2025-03-12 17:52:14 CET.

Package ERROR NOTE OK
bain 15
gorica 15
pema 1 7 7
theorytools 15
tidySEM 1 14
worcs 15

Package bain

Current CRAN status: OK: 15

Package gorica

Current CRAN status: OK: 15

Package pema

Current CRAN status: ERROR: 1, NOTE: 7, OK: 7

Version: 0.1.3
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.1.3
Check: installed package size
Result: NOTE installed size is 151.6Mb sub-directories of 1Mb or more: libs 150.6Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.1.3
Check: tests
Result: ERROR Running ‘testthat.R’ [16s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pema) > > test_check("pema") SAMPLING FOR MODEL 'lasso_MA' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 6.6e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.66 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 10 [ 10%] (Warmup) Chain 1: Iteration: 2 / 10 [ 20%] (Warmup) Chain 1: Iteration: 3 / 10 [ 30%] (Warmup) Chain 1: Iteration: 4 / 10 [ 40%] (Warmup) Chain 1: Iteration: 5 / 10 [ 50%] (Warmup) Chain 1: Iteration: 6 / 10 [ 60%] (Sampling) Chain 1: Iteration: 7 / 10 [ 70%] (Sampling) Chain 1: Iteration: 8 / 10 [ 80%] (Sampling) Chain 1: Iteration: 9 / 10 [ 90%] (Sampling) Chain 1: Iteration: 10 / 10 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.011 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0.011 seconds (Total) Chain 1: SAMPLING FOR MODEL 'lasso_MA' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 3.6e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 10 [ 10%] (Warmup) Chain 2: Iteration: 2 / 10 [ 20%] (Warmup) Chain 2: Iteration: 3 / 10 [ 30%] (Warmup) Chain 2: Iteration: 4 / 10 [ 40%] (Warmup) Chain 2: Iteration: 5 / 10 [ 50%] (Warmup) Chain 2: Iteration: 6 / 10 [ 60%] (Sampling) Chain 2: Iteration: 7 / 10 [ 70%] (Sampling) Chain 2: Iteration: 8 / 10 [ 80%] (Sampling) Chain 2: Iteration: 9 / 10 [ 90%] (Sampling) Chain 2: Iteration: 10 / 10 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.013 seconds (Warm-up) Chain 2: 0 seconds (Sampling) Chain 2: 0.013 seconds (Total) Chain 2: SAMPLING FOR MODEL 'lasso_MA' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 3.5e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 10 [ 10%] (Warmup) Chain 3: Iteration: 2 / 10 [ 20%] (Warmup) Chain 3: Iteration: 3 / 10 [ 30%] (Warmup) Chain 3: Iteration: 4 / 10 [ 40%] (Warmup) Chain 3: Iteration: 5 / 10 [ 50%] (Warmup) Chain 3: Iteration: 6 / 10 [ 60%] (Sampling) Chain 3: Iteration: 7 / 10 [ 70%] (Sampling) Chain 3: Iteration: 8 / 10 [ 80%] (Sampling) Chain 3: Iteration: 9 / 10 [ 90%] (Sampling) Chain 3: Iteration: 10 / 10 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.013 seconds (Warm-up) Chain 3: 0 seconds (Sampling) Chain 3: 0.013 seconds (Total) Chain 3: SAMPLING FOR MODEL 'lasso_MA' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 3.5e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 10 [ 10%] (Warmup) Chain 4: Iteration: 2 / 10 [ 20%] (Warmup) Chain 4: Iteration: 3 / 10 [ 30%] (Warmup) Chain 4: Iteration: 4 / 10 [ 40%] (Warmup) Chain 4: Iteration: 5 / 10 [ 50%] (Warmup) Chain 4: Iteration: 6 / 10 [ 60%] (Sampling) Chain 4: Iteration: 7 / 10 [ 70%] (Sampling) Chain 4: Iteration: 8 / 10 [ 80%] (Sampling) Chain 4: Iteration: 9 / 10 [ 90%] (Sampling) Chain 4: Iteration: 10 / 10 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.016 seconds (Warm-up) Chain 4: 0 seconds (Sampling) Chain 4: 0.016 seconds (Total) Chain 4: [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-multiple_imp.R:8:1'): (code run outside of `test_that()`) ────── Error: package or namespace load failed for 'mice' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called 'pan' Backtrace: ▆ 1. └─base::library(mice) at test-multiple_imp.R:8:1 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted Flavor: r-release-macos-arm64

Package theorytools

Current CRAN status: OK: 15

Package tidySEM

Current CRAN status: ERROR: 1, OK: 14

Version: 0.2.8
Check: examples
Result: ERROR Running examples in ‘tidySEM-Ex.R’ failed The error most likely occurred in: > ### Name: pseudo_class > ### Title: Estimate an Auxiliary Model using the Pseudo-Class Method > ### Aliases: pseudo_class pseudo_class.MxModel > > ### ** Examples > > if(requireNamespace("OpenMx", quietly = TRUE)){ + set.seed(2) + dat <- iris[c(1:5, 50:55, 100:105), 1:4] + colnames(dat) <- c("SL", "SW", "PL", "PW") + fit <- suppressWarnings(mx_profiles(data = dat, classes = 3)) + + pct_mx <- pseudo_class(x = fit, + model = "SL ~ class", + data = dat, + m = 2) + + pct_lm <- pseudo_class(x = fit, + model = lm( SL ~ class, data = data), + data = dat, + m = 2) + + + pcte <- pseudo_class(x = fit, + model = lm(SL ~ class, data = data), + data = dat, + m = 2) + + pct_func <- pseudo_class(x = fit, + model = function(data){lm(SL ~ class, data = data)}, + data = dat, + m = 2) + + + } Running mix3 with 18 parameters Running mix3 with 18 parameters The degrees of freedom are assumed to be equal to the total number of observations used in the model ( 17 ) minus the number of parameters estimated ( 5 ). This may not be correct. If necessary, provide a better value via the 'df_complete' argument Error in pseudo_class_pool.default(fits, ...) : Cannot pool fit objects, because package 'mice' is not installed Calls: pseudo_class ... pseudo_class.class_draws -> pseudo_class_pool -> pseudo_class_pool.default Execution halted Flavor: r-release-macos-arm64

Version: 0.2.8
Check: tests
Result: ERROR Running ‘testthat.R’ [40s/40s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidySEM) > if(requireNamespace("OpenMx", quietly = TRUE)) require("OpenMx") Loading required package: OpenMx OpenMx may run faster if it is compiled to take advantage of multiple cores. > if(requireNamespace("umx", quietly = TRUE)) require("umx") Loading required package: umx For an overview type '?umx' Attaching package: 'umx' The following object is masked from 'package:stats': loadings > options("test_mplus" = FALSE) > test_check("tidySEM") [ FAIL 1 | WARN 2 | SKIP 6 | PASS 118 ] ══ Skipped tests (6) ═══════════════════════════════════════════════════════════ • Not run by package maintainer (5): 'test-multigroup_mx.R:3:5', 'test-openmx_ordinal.R:3:5', 'test-openmx_ordinal_methods.R:4:5', 'test-plot_multigroup_multilevel.R:2:3', 'test-plot_plot_prob.R:3:3' • On CRAN (1): 'test-plot_profiles_varyingcov.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-pseudo_class_technique.R:8:3'): pseudo_class works ───────────── Error in `pseudo_class_pool.default(fits, ...)`: Cannot pool fit objects, because package 'mice' is not installed Backtrace: ▆ 1. ├─tidySEM::pseudo_class(...) 2. └─tidySEM:::pseudo_class.class_draws(...) 3. ├─tidySEM:::pseudo_class_pool(fits, ...) 4. └─tidySEM:::pseudo_class_pool.default(fits, ...) [ FAIL 1 | WARN 2 | SKIP 6 | PASS 118 ] Error: Test failures Execution halted Flavor: r-release-macos-arm64

Package worcs

Current CRAN status: OK: 15