Last updated on 2026-08-05 09:50:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 4.36 | 476.25 | 480.61 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 3.47 | 298.59 | 302.06 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.2 | 793.03 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.2 | 388.97 | OK | |||
| r-devel-windows-x86_64 | 1.2.0 | 8.00 | 503.00 | 511.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.0 | 4.49 | 461.00 | 465.49 | ERROR | |
| r-release-linux-x86_64 | 1.2.0 | 4.36 | 462.27 | 466.63 | ERROR | |
| r-release-macos-arm64 | 1.3.2 | 1.00 | 139.00 | 140.00 | OK | |
| r-release-macos-x86_64 | 1.3.2 | 4.00 | 709.00 | 713.00 | OK | |
| r-release-windows-x86_64 | 1.3.2 | 13.00 | 510.00 | 523.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.2 | 1.00 | 138.00 | 139.00 | OK | |
| r-oldrel-macos-x86_64 | 1.3.2 | 3.00 | 846.00 | 849.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.0 | 10.00 | 665.00 | 675.00 | ERROR |
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [444s/473s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpAjqNd1/pdf1ce33d4af0f644
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpAjqNd1/pdf1ce33dcb8fd82
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpAjqNd1/pdf1ce33d21f010e5
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpAjqNd1/pdf1ce33d10779898
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpAjqNd1/pdf1ce33de1637e
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [272s/328s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/Rtmp8xpDTp/pdf2345be3428fe75
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/Rtmp8xpDTp/pdf2345be5b36565a
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/Rtmp8xpDTp/pdf2345be7870c88f
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/Rtmp8xpDTp/pdf2345be6053eec2
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/Rtmp8xpDTp/pdf2345be36a33a6a
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.0
Check: tests
Result: ERROR
Running 'testthat.R' [453s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_04_01_50_00_19257\RtmpSSH96O/pdf1315035c4f91
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_04_01_50_00_19257\RtmpSSH96O/pdf1315098b5cc5
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_04_01_50_00_19257\RtmpSSH96O/pdf1315064a57b52
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_04_01_50_00_19257\RtmpSSH96O/pdf1315046d929c2
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_04_01_50_00_19257\RtmpSSH96O/pdf131507bc82a7b
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [433s/474s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpxQCc1v/pdf1f45693605568e
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpxQCc1v/pdf1f456925768833
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpxQCc1v/pdf1f4569bff7b86
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpxQCc1v/pdf1f45695a474119
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpxQCc1v/pdf1f456921adba2
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [435s/533s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpYfLbYf/pdf2bfa94f5cada3
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpYfLbYf/pdf2bfa96efa1a06
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpYfLbYf/pdf2bfa95fa2914f
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpYfLbYf/pdf2bfa92cea9655
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpYfLbYf/pdf2bfa97bb7cbe3
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.0
Check: tests
Result: ERROR
Running 'testthat.R' [10m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_03_20_46_53_25402\Rtmp8e4m3H/pdf1bc0461dfc08
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_03_20_46_53_25402\Rtmp8e4m3H/pdf1bc04185a3b9a
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_03_20_46_53_25402\Rtmp8e4m3H/pdf1bc04166b4a0f
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_03_20_46_53_25402\Rtmp8e4m3H/pdf1bc0475eb244
Cleaning up 1 leaked TEMP file(s):
D:\temp\2026_08_03_20_46_53_25402\Rtmp8e4m3H/pdf1bc04491d5668
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64