CRAN Package Check Results for Package RRphylo

Last updated on 2024-08-16 06:50:10 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	2.8.0	25.69	305.99	331.68	ERROR
r-devel-linux-x86_64-debian-gcc	2.8.0	16.81	216.38	233.19	ERROR
r-devel-linux-x86_64-fedora-clang	2.8.0			561.98	ERROR
r-devel-linux-x86_64-fedora-gcc	2.8.0			555.66	ERROR
r-devel-windows-x86_64	2.8.0	26.00	251.00	277.00	NOTE
r-patched-linux-x86_64	2.8.0	22.86	300.33	323.19	OK
r-release-linux-x86_64	2.8.0	26.30	301.11	327.41	OK
r-release-macos-arm64	2.8.0			119.00	NOTE
r-release-macos-x86_64	2.8.0			189.00	NOTE
r-release-windows-x86_64	2.8.0	27.00	250.00	277.00	NOTE
r-oldrel-macos-arm64	2.8.0			137.00	NOTE
r-oldrel-macos-x86_64	2.8.0			193.00	NOTE
r-oldrel-windows-x86_64	2.8.0	33.00	318.00	351.00	NOTE

Additional issues

noSuggests

Check Details

Version: 2.8.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘mvMORPH’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Plotting-tools.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129052 bytes Input file size = 129310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 Output IDAT size = 103405 bytes (25647 bytes decrease) Output file size = 103483 bytes (25827 bytes = 19.97% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 125715 bytes Input file size = 125973 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 Output IDAT size = 101651 bytes (24064 bytes decrease) Output file size = 101729 bytes (24244 bytes = 19.25% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105846 bytes Input file size = 106068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 Output IDAT size = 87795 bytes (18051 bytes decrease) Output file size = 87873 bytes (18195 bytes = 17.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105668 bytes Input file size = 105890 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 Output IDAT size = 87094 bytes (18574 bytes decrease) Output file size = 87172 bytes (18718 bytes = 17.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43744 bytes Input file size = 43882 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40175 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 Output IDAT size = 39570 bytes (4174 bytes decrease) Output file size = 39648 bytes (4234 bytes = 9.65% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110106 bytes Input file size = 110340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 Output IDAT size = 89586 bytes (20520 bytes decrease) Output file size = 89664 bytes (20676 bytes = 18.74% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29201 bytes Input file size = 29315 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28914 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 Output IDAT size = 26217 bytes (2984 bytes decrease) Output file size = 26295 bytes (3020 bytes = 10.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110303 bytes Input file size = 110537 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 Output IDAT size = 89519 bytes (20784 bytes decrease) Output file size = 89597 bytes (20940 bytes = 18.94% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 193926 bytes Input file size = 194280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 Output IDAT size = 147677 bytes (46249 bytes decrease) Output file size = 147755 bytes (46525 bytes = 23.95% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 218772 bytes Input file size = 219162 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 Output IDAT size = 166257 bytes (52515 bytes decrease) Output file size = 166335 bytes (52827 bytes = 24.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129616 bytes Input file size = 129874 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 Output IDAT size = 102537 bytes (27079 bytes decrease) Output file size = 102615 bytes (27259 bytes = 20.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 143796 bytes Input file size = 144078 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 Output IDAT size = 110872 bytes (32924 bytes decrease) Output file size = 110950 bytes (33128 bytes = 22.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-3.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 145636 bytes Input file size = 145918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 Output IDAT size = 106122 bytes (39514 bytes decrease) Output file size = 106200 bytes (39718 bytes = 27.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-4.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95806 bytes Input file size = 96016 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 Output IDAT size = 75651 bytes (20155 bytes decrease) Output file size = 75729 bytes (20287 bytes = 21.13% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 68253 bytes Input file size = 68427 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 Output IDAT size = 50625 bytes (17628 bytes decrease) Output file size = 50703 bytes (17724 bytes = 25.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 270156 bytes Input file size = 270618 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 Output IDAT size = 235100 bytes (35056 bytes decrease) Output file size = 235178 bytes (35440 bytes = 13.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 69835 bytes Input file size = 70009 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 Output IDAT size = 52235 bytes (17600 bytes decrease) Output file size = 52313 bytes (17696 bytes = 25.28% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195906 bytes Input file size = 196260 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 Output IDAT size = 137647 bytes (58259 bytes decrease) Output file size = 137725 bytes (58535 bytes = 29.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 234300 bytes Input file size = 234714 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 Output IDAT size = 170685 bytes (63615 bytes decrease) Output file size = 170763 bytes (63951 bytes = 27.25% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-18-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41508 bytes Input file size = 41646 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39895 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 Output IDAT size = 38947 bytes (2561 bytes decrease) Output file size = 39025 bytes (2621 bytes = 6.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 139237 bytes Input file size = 139507 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 Output IDAT size = 102395 bytes (36842 bytes decrease) Output file size = 102473 bytes (37034 bytes = 26.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105694 bytes Input file size = 105916 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 Output IDAT size = 79977 bytes (25717 bytes decrease) Output file size = 80055 bytes (25861 bytes = 24.42% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-21-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37589 bytes Input file size = 37715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36331 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 Output IDAT size = 35237 bytes (2352 bytes decrease) Output file size = 35315 bytes (2400 bytes = 6.36% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 136333 bytes Input file size = 136603 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101426 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101426 Output IDAT size = 101426 bytes (34907 bytes decrease) Output file size = 101504 bytes (35099 bytes = 25.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111248 bytes Input file size = 111482 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 Output IDAT size = 82070 bytes (29178 bytes decrease) Output file size = 82148 bytes (29334 bytes = 26.31% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124900 bytes Input file size = 125158 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 Output IDAT size = 96205 bytes (28695 bytes decrease) Output file size = 96283 bytes (28875 bytes = 23.07% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 179550 bytes Input file size = 179880 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127425 Output IDAT size = 127425 bytes (52125 bytes decrease) Output file size = 127503 bytes (52377 bytes = 29.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 119620 bytes Input file size = 119866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 Output IDAT size = 88365 bytes (31255 bytes decrease) Output file size = 88443 bytes (31423 bytes = 26.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-4.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195718 bytes Input file size = 196072 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153851 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153851 Output IDAT size = 153851 bytes (41867 bytes decrease) Output file size = 153929 bytes (42143 bytes = 21.49% decrease) --- finished re-building ‘Plotting-tools.Rmd’ --- re-building ‘RRphylo.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-4-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-5-1.png 880x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23594 bytes Input file size = 24476 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20999 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 Output IDAT size = 20658 bytes (2936 bytes decrease) Output file size = 20736 bytes (3740 bytes = 15.28% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138070 bytes Input file size = 138340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 Output IDAT size = 113807 bytes (24263 bytes decrease) Output file size = 113885 bytes (24455 bytes = 17.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-7-1.png 1760x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 57094 bytes Input file size = 58024 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51984 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 Output IDAT size = 51534 bytes (5560 bytes decrease) Output file size = 51612 bytes (6412 bytes = 11.05% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-8-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 247821 bytes Input file size = 248259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 Output IDAT size = 169441 bytes (78380 bytes decrease) Output file size = 169519 bytes (78740 bytes = 31.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-9-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-1.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18043 bytes Input file size = 18145 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 Output IDAT size = 14940 bytes (3103 bytes decrease) Output file size = 15018 bytes (3127 bytes = 17.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-2.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23603 bytes Input file size = 23705 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 Output IDAT size = 19755 bytes (3848 bytes decrease) Output file size = 19833 bytes (3872 bytes = 16.33% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-11-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56108 bytes Input file size = 56258 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52420 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Output IDAT size = 52083 bytes (4025 bytes decrease) Output file size = 52161 bytes (4097 bytes = 7.28% decrease) --- finished re-building ‘RRphylo.Rmd’ --- re-building ‘Tree-Manipulation.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-2-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 67692 bytes Input file size = 67866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 Output IDAT size = 57135 bytes (10557 bytes decrease) Output file size = 57213 bytes (10653 bytes = 15.70% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 100843 bytes Input file size = 101065 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 Output IDAT size = 81794 bytes (19049 bytes decrease) Output file size = 81872 bytes (19193 bytes = 18.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 103844 bytes Input file size = 104066 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 Output IDAT size = 85098 bytes (18746 bytes decrease) Output file size = 85176 bytes (18890 bytes = 18.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 107411 bytes Input file size = 107645 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 Output IDAT size = 94233 bytes (13178 bytes decrease) Output file size = 94311 bytes (13334 bytes = 12.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 93275 bytes Input file size = 93485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 Output IDAT size = 75215 bytes (18060 bytes decrease) Output file size = 75293 bytes (18192 bytes = 19.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49585 bytes Input file size = 49735 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43100 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 Output IDAT size = 43061 bytes (6524 bytes decrease) Output file size = 43139 bytes (6596 bytes = 13.26% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-10-1.png 1200x1200 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54545 bytes Input file size = 54695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 Output IDAT size = 45645 bytes (8900 bytes decrease) Output file size = 45723 bytes (8972 bytes = 16.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-11-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28014 bytes Input file size = 28128 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 Output IDAT size = 22988 bytes (5026 bytes decrease) Output file size = 23066 bytes (5062 bytes = 18.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-1.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19899 bytes Input file size = 20781 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 Output IDAT size = 16628 bytes (3271 bytes decrease) Output file size = 16706 bytes (4075 bytes = 19.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-2.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29359 bytes Input file size = 29473 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 Output IDAT size = 24575 bytes (4784 bytes decrease) Output file size = 24653 bytes (4820 bytes = 16.35% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-3.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21781 bytes Input file size = 22663 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 Output IDAT size = 18212 bytes (3569 bytes decrease) Output file size = 18290 bytes (4373 bytes = 19.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-13-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28928 bytes Input file size = 29042 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 Output IDAT size = 24231 bytes (4697 bytes decrease) Output file size = 24309 bytes (4733 bytes = 16.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-15-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37097 bytes Input file size = 37223 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 Output IDAT size = 31700 bytes (5397 bytes decrease) Output file size = 31778 bytes (5445 bytes = 14.63% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-17-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33975 bytes Input file size = 34101 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 Output IDAT size = 29419 bytes (4556 bytes decrease) Output file size = 29497 bytes (4604 bytes = 13.50% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-1.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28239 bytes Input file size = 28353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 Output IDAT size = 23316 bytes (4923 bytes decrease) Output file size = 23394 bytes (4959 bytes = 17.49% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-2.png 1320x660 pixels, 8 bits/pixel, 200 colors in palette Input IDAT size = 15132 bytes Input file size = 15834 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12398 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 Output IDAT size = 12388 bytes (2744 bytes decrease) Output file size = 13078 bytes (2756 bytes = 17.41% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-3.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28098 bytes Input file size = 28212 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 Output IDAT size = 23759 bytes (4339 bytes decrease) Output file size = 23837 bytes (4375 bytes = 15.51% decrease) --- finished re-building ‘Tree-Manipulation.Rmd’ --- re-building ‘overfitRR.Rmd’ using rmarkdown_notangle --- finished re-building ‘overfitRR.Rmd’ --- re-building ‘search.conv.Rmd’ using rmarkdown_notangle Quitting from lines 229-306 [noconv] (search.conv.Rmd) Error: processing vignette 'search.conv.Rmd' failed with diagnostics: could not find function "mvSIM" --- failed re-building ‘search.conv.Rmd’ --- re-building ‘search.shift.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-2-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38295 bytes Input file size = 38421 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 Output IDAT size = 30597 bytes (7698 bytes decrease) Output file size = 30675 bytes (7746 bytes = 20.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-6-1.png 1540x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 532464 bytes Input file size = 533310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 Output IDAT size = 389767 bytes (142697 bytes decrease) Output file size = 389845 bytes (143465 bytes = 26.90% decrease) --- finished re-building ‘search.shift.Rmd’ --- re-building ‘search.trend.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-2-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 251007 bytes Input file size = 251445 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 Output IDAT size = 197330 bytes (53677 bytes decrease) Output file size = 197408 bytes (54037 bytes = 21.49% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-5-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 339658 bytes Input file size = 340228 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 Output IDAT size = 241740 bytes (97918 bytes decrease) Output file size = 241818 bytes (98410 bytes = 28.92% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-9-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51264 bytes Input file size = 51414 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49171 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Output IDAT size = 47721 bytes (3543 bytes decrease) Output file size = 47799 bytes (3615 bytes = 7.03% decrease) --- finished re-building ‘search.trend.Rmd’ --- re-building ‘swapONE.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-2-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25941 bytes Input file size = 26055 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 Output IDAT size = 23260 bytes (2681 bytes decrease) Output file size = 23338 bytes (2717 bytes = 10.43% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-3-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28446 bytes Input file size = 28560 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 Output IDAT size = 24784 bytes (3662 bytes decrease) Output file size = 24862 bytes (3698 bytes = 12.95% decrease) --- finished re-building ‘swapONE.Rmd’ SUMMARY: processing the following file failed: ‘search.conv.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Plotting-tools.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129052 bytes Input file size = 129310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 Output IDAT size = 103405 bytes (25647 bytes decrease) Output file size = 103483 bytes (25827 bytes = 19.97% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 125715 bytes Input file size = 125973 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 Output IDAT size = 101651 bytes (24064 bytes decrease) Output file size = 101729 bytes (24244 bytes = 19.25% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105846 bytes Input file size = 106068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 Output IDAT size = 87795 bytes (18051 bytes decrease) Output file size = 87873 bytes (18195 bytes = 17.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105668 bytes Input file size = 105890 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 Output IDAT size = 87094 bytes (18574 bytes decrease) Output file size = 87172 bytes (18718 bytes = 17.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43744 bytes Input file size = 43882 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40175 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 Output IDAT size = 39570 bytes (4174 bytes decrease) Output file size = 39648 bytes (4234 bytes = 9.65% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110106 bytes Input file size = 110340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 Output IDAT size = 89586 bytes (20520 bytes decrease) Output file size = 89664 bytes (20676 bytes = 18.74% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29201 bytes Input file size = 29315 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28914 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 Output IDAT size = 26217 bytes (2984 bytes decrease) Output file size = 26295 bytes (3020 bytes = 10.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110303 bytes Input file size = 110537 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 Output IDAT size = 89519 bytes (20784 bytes decrease) Output file size = 89597 bytes (20940 bytes = 18.94% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 193926 bytes Input file size = 194280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 Output IDAT size = 147677 bytes (46249 bytes decrease) Output file size = 147755 bytes (46525 bytes = 23.95% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 218772 bytes Input file size = 219162 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 Output IDAT size = 166257 bytes (52515 bytes decrease) Output file size = 166335 bytes (52827 bytes = 24.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129616 bytes Input file size = 129874 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 Output IDAT size = 102537 bytes (27079 bytes decrease) Output file size = 102615 bytes (27259 bytes = 20.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 143796 bytes Input file size = 144078 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 Output IDAT size = 110872 bytes (32924 bytes decrease) Output file size = 110950 bytes (33128 bytes = 22.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-3.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 145636 bytes Input file size = 145918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 Output IDAT size = 106122 bytes (39514 bytes decrease) Output file size = 106200 bytes (39718 bytes = 27.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-4.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95806 bytes Input file size = 96016 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 Output IDAT size = 75651 bytes (20155 bytes decrease) Output file size = 75729 bytes (20287 bytes = 21.13% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 68253 bytes Input file size = 68427 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 Output IDAT size = 50625 bytes (17628 bytes decrease) Output file size = 50703 bytes (17724 bytes = 25.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 270156 bytes Input file size = 270618 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 Output IDAT size = 235100 bytes (35056 bytes decrease) Output file size = 235178 bytes (35440 bytes = 13.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 69835 bytes Input file size = 70009 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 Output IDAT size = 52235 bytes (17600 bytes decrease) Output file size = 52313 bytes (17696 bytes = 25.28% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195906 bytes Input file size = 196260 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 Output IDAT size = 137647 bytes (58259 bytes decrease) Output file size = 137725 bytes (58535 bytes = 29.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 234300 bytes Input file size = 234714 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 Output IDAT size = 170685 bytes (63615 bytes decrease) Output file size = 170763 bytes (63951 bytes = 27.25% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-18-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41508 bytes Input file size = 41646 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39895 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 Output IDAT size = 38947 bytes (2561 bytes decrease) Output file size = 39025 bytes (2621 bytes = 6.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 139237 bytes Input file size = 139507 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 Output IDAT size = 102395 bytes (36842 bytes decrease) Output file size = 102473 bytes (37034 bytes = 26.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105694 bytes Input file size = 105916 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 Output IDAT size = 79977 bytes (25717 bytes decrease) Output file size = 80055 bytes (25861 bytes = 24.42% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-21-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37589 bytes Input file size = 37715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36331 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 Output IDAT size = 35237 bytes (2352 bytes decrease) Output file size = 35315 bytes (2400 bytes = 6.36% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 136333 bytes Input file size = 136603 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101426 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101426 Output IDAT size = 101426 bytes (34907 bytes decrease) Output file size = 101504 bytes (35099 bytes = 25.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111248 bytes Input file size = 111482 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 Output IDAT size = 82070 bytes (29178 bytes decrease) Output file size = 82148 bytes (29334 bytes = 26.31% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124900 bytes Input file size = 125158 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 Output IDAT size = 96205 bytes (28695 bytes decrease) Output file size = 96283 bytes (28875 bytes = 23.07% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 179550 bytes Input file size = 179880 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127425 Output IDAT size = 127425 bytes (52125 bytes decrease) Output file size = 127503 bytes (52377 bytes = 29.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 119620 bytes Input file size = 119866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 Output IDAT size = 88365 bytes (31255 bytes decrease) Output file size = 88443 bytes (31423 bytes = 26.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-4.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195718 bytes Input file size = 196072 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153851 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153851 Output IDAT size = 153851 bytes (41867 bytes decrease) Output file size = 153929 bytes (42143 bytes = 21.49% decrease) --- finished re-building ‘Plotting-tools.Rmd’ --- re-building ‘RRphylo.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-4-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-5-1.png 880x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23594 bytes Input file size = 24476 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20999 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 Output IDAT size = 20658 bytes (2936 bytes decrease) Output file size = 20736 bytes (3740 bytes = 15.28% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138070 bytes Input file size = 138340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 Output IDAT size = 113807 bytes (24263 bytes decrease) Output file size = 113885 bytes (24455 bytes = 17.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-7-1.png 1760x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 57094 bytes Input file size = 58024 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51984 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 Output IDAT size = 51534 bytes (5560 bytes decrease) Output file size = 51612 bytes (6412 bytes = 11.05% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-8-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 247821 bytes Input file size = 248259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 Output IDAT size = 169441 bytes (78380 bytes decrease) Output file size = 169519 bytes (78740 bytes = 31.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-9-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-1.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18043 bytes Input file size = 18145 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 Output IDAT size = 14940 bytes (3103 bytes decrease) Output file size = 15018 bytes (3127 bytes = 17.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-2.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23603 bytes Input file size = 23705 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 Output IDAT size = 19755 bytes (3848 bytes decrease) Output file size = 19833 bytes (3872 bytes = 16.33% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-11-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56108 bytes Input file size = 56258 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52420 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Output IDAT size = 52083 bytes (4025 bytes decrease) Output file size = 52161 bytes (4097 bytes = 7.28% decrease) --- finished re-building ‘RRphylo.Rmd’ --- re-building ‘Tree-Manipulation.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-2-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 67692 bytes Input file size = 67866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 Output IDAT size = 57135 bytes (10557 bytes decrease) Output file size = 57213 bytes (10653 bytes = 15.70% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 100843 bytes Input file size = 101065 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 Output IDAT size = 81794 bytes (19049 bytes decrease) Output file size = 81872 bytes (19193 bytes = 18.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 103844 bytes Input file size = 104066 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 Output IDAT size = 85098 bytes (18746 bytes decrease) Output file size = 85176 bytes (18890 bytes = 18.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 107411 bytes Input file size = 107645 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 Output IDAT size = 94233 bytes (13178 bytes decrease) Output file size = 94311 bytes (13334 bytes = 12.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 93275 bytes Input file size = 93485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 Output IDAT size = 75215 bytes (18060 bytes decrease) Output file size = 75293 bytes (18192 bytes = 19.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49585 bytes Input file size = 49735 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43100 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 Output IDAT size = 43061 bytes (6524 bytes decrease) Output file size = 43139 bytes (6596 bytes = 13.26% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-10-1.png 1200x1200 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54545 bytes Input file size = 54695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 Output IDAT size = 45645 bytes (8900 bytes decrease) Output file size = 45723 bytes (8972 bytes = 16.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-11-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28014 bytes Input file size = 28128 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 Output IDAT size = 22988 bytes (5026 bytes decrease) Output file size = 23066 bytes (5062 bytes = 18.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-1.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19899 bytes Input file size = 20781 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 Output IDAT size = 16628 bytes (3271 bytes decrease) Output file size = 16706 bytes (4075 bytes = 19.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-2.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29359 bytes Input file size = 29473 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 Output IDAT size = 24575 bytes (4784 bytes decrease) Output file size = 24653 bytes (4820 bytes = 16.35% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-3.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21781 bytes Input file size = 22663 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 Output IDAT size = 18212 bytes (3569 bytes decrease) Output file size = 18290 bytes (4373 bytes = 19.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-13-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28928 bytes Input file size = 29042 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 Output IDAT size = 24231 bytes (4697 bytes decrease) Output file size = 24309 bytes (4733 bytes = 16.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-15-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37097 bytes Input file size = 37223 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 Output IDAT size = 31700 bytes (5397 bytes decrease) Output file size = 31778 bytes (5445 bytes = 14.63% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-17-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33975 bytes Input file size = 34101 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 Output IDAT size = 29419 bytes (4556 bytes decrease) Output file size = 29497 bytes (4604 bytes = 13.50% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-1.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28239 bytes Input file size = 28353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 Output IDAT size = 23316 bytes (4923 bytes decrease) Output file size = 23394 bytes (4959 bytes = 17.49% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-2.png 1320x660 pixels, 8 bits/pixel, 200 colors in palette Input IDAT size = 15132 bytes Input file size = 15834 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12398 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 Output IDAT size = 12388 bytes (2744 bytes decrease) Output file size = 13078 bytes (2756 bytes = 17.41% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-3.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28098 bytes Input file size = 28212 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 Output IDAT size = 23759 bytes (4339 bytes decrease) Output file size = 23837 bytes (4375 bytes = 15.51% decrease) --- finished re-building ‘Tree-Manipulation.Rmd’ --- re-building ‘overfitRR.Rmd’ using rmarkdown_notangle --- finished re-building ‘overfitRR.Rmd’ --- re-building ‘search.conv.Rmd’ using rmarkdown_notangle Quitting from lines 229-306 [noconv] (search.conv.Rmd) Error: processing vignette 'search.conv.Rmd' failed with diagnostics: could not find function "mvSIM" --- failed re-building ‘search.conv.Rmd’ --- re-building ‘search.shift.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-2-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38295 bytes Input file size = 38421 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 Output IDAT size = 30597 bytes (7698 bytes decrease) Output file size = 30675 bytes (7746 bytes = 20.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-6-1.png 1540x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 532464 bytes Input file size = 533310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 Output IDAT size = 389767 bytes (142697 bytes decrease) Output file size = 389845 bytes (143465 bytes = 26.90% decrease) --- finished re-building ‘search.shift.Rmd’ --- re-building ‘search.trend.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-2-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 251007 bytes Input file size = 251445 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 Output IDAT size = 197330 bytes (53677 bytes decrease) Output file size = 197408 bytes (54037 bytes = 21.49% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-5-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 339658 bytes Input file size = 340228 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 Output IDAT size = 241740 bytes (97918 bytes decrease) Output file size = 241818 bytes (98410 bytes = 28.92% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-9-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51264 bytes Input file size = 51414 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49171 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Output IDAT size = 47721 bytes (3543 bytes decrease) Output file size = 47799 bytes (3615 bytes = 7.03% decrease) --- finished re-building ‘search.trend.Rmd’ --- re-building ‘swapONE.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-2-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25941 bytes Input file size = 26055 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 Output IDAT size = 23260 bytes (2681 bytes decrease) Output file size = 23338 bytes (2717 bytes = 10.43% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-3-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28446 bytes Input file size = 28560 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 Output IDAT size = 24784 bytes (3662 bytes decrease) Output file size = 24862 bytes (3698 bytes = 12.95% decrease) --- finished re-building ‘swapONE.Rmd’ SUMMARY: processing the following file failed: ‘search.conv.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.8.0
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: doc 3.6Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Plotting-tools.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129052 bytes Input file size = 129310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 Output IDAT size = 103405 bytes (25647 bytes decrease) Output file size = 103483 bytes (25827 bytes = 19.97% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 125715 bytes Input file size = 125973 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 Output IDAT size = 101651 bytes (24064 bytes decrease) Output file size = 101729 bytes (24244 bytes = 19.25% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105846 bytes Input file size = 106068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 Output IDAT size = 87795 bytes (18051 bytes decrease) Output file size = 87873 bytes (18195 bytes = 17.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105668 bytes Input file size = 105890 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 Output IDAT size = 87094 bytes (18574 bytes decrease) Output file size = 87172 bytes (18718 bytes = 17.68% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43744 bytes Input file size = 43882 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40175 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 Output IDAT size = 39570 bytes (4174 bytes decrease) Output file size = 39648 bytes (4234 bytes = 9.65% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110106 bytes Input file size = 110340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 Output IDAT size = 89586 bytes (20520 bytes decrease) Output file size = 89664 bytes (20676 bytes = 18.74% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29201 bytes Input file size = 29315 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28914 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 Output IDAT size = 26217 bytes (2984 bytes decrease) Output file size = 26295 bytes (3020 bytes = 10.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110303 bytes Input file size = 110537 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 Output IDAT size = 89519 bytes (20784 bytes decrease) Output file size = 89597 bytes (20940 bytes = 18.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 193926 bytes Input file size = 194280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 Output IDAT size = 147677 bytes (46249 bytes decrease) Output file size = 147755 bytes (46525 bytes = 23.95% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 218772 bytes Input file size = 219162 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 Output IDAT size = 166257 bytes (52515 bytes decrease) Output file size = 166335 bytes (52827 bytes = 24.10% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129616 bytes Input file size = 129874 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 Output IDAT size = 102537 bytes (27079 bytes decrease) Output file size = 102615 bytes (27259 bytes = 20.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 143796 bytes Input file size = 144078 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 Output IDAT size = 110872 bytes (32924 bytes decrease) Output file size = 110950 bytes (33128 bytes = 22.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-3.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 145636 bytes Input file size = 145918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 Output IDAT size = 106122 bytes (39514 bytes decrease) Output file size = 106200 bytes (39718 bytes = 27.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-4.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95806 bytes Input file size = 96016 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 Output IDAT size = 75651 bytes (20155 bytes decrease) Output file size = 75729 bytes (20287 bytes = 21.13% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 68253 bytes Input file size = 68427 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 Output IDAT size = 50625 bytes (17628 bytes decrease) Output file size = 50703 bytes (17724 bytes = 25.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 270156 bytes Input file size = 270618 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 Output IDAT size = 235100 bytes (35056 bytes decrease) Output file size = 235178 bytes (35440 bytes = 13.10% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 69835 bytes Input file size = 70009 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 Output IDAT size = 52235 bytes (17600 bytes decrease) Output file size = 52313 bytes (17696 bytes = 25.28% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195906 bytes Input file size = 196260 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 Output IDAT size = 137647 bytes (58259 bytes decrease) Output file size = 137725 bytes (58535 bytes = 29.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 234300 bytes Input file size = 234714 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 Output IDAT size = 170685 bytes (63615 bytes decrease) Output file size = 170763 bytes (63951 bytes = 27.25% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-18-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41508 bytes Input file size = 41646 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39895 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 Output IDAT size = 38947 bytes (2561 bytes decrease) Output file size = 39025 bytes (2621 bytes = 6.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 139237 bytes Input file size = 139507 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 Output IDAT size = 102395 bytes (36842 bytes decrease) Output file size = 102473 bytes (37034 bytes = 26.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105694 bytes Input file size = 105916 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 Output IDAT size = 79977 bytes (25717 bytes decrease) Output file size = 80055 bytes (25861 bytes = 24.42% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-21-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37589 bytes Input file size = 37715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36331 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 Output IDAT size = 35237 bytes (2352 bytes decrease) Output file size = 35315 bytes (2400 bytes = 6.36% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 136335 bytes Input file size = 136605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101420 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101420 Output IDAT size = 101420 bytes (34915 bytes decrease) Output file size = 101498 bytes (35107 bytes = 25.70% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111248 bytes Input file size = 111482 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 Output IDAT size = 82070 bytes (29178 bytes decrease) Output file size = 82148 bytes (29334 bytes = 26.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124900 bytes Input file size = 125158 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 Output IDAT size = 96205 bytes (28695 bytes decrease) Output file size = 96283 bytes (28875 bytes = 23.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 179587 bytes Input file size = 179917 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127443 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127443 Output IDAT size = 127443 bytes (52144 bytes decrease) Output file size = 127521 bytes (52396 bytes = 29.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 119620 bytes Input file size = 119866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 Output IDAT size = 88365 bytes (31255 bytes decrease) Output file size = 88443 bytes (31423 bytes = 26.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-4.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195745 bytes Input file size = 196099 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153832 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153832 Output IDAT size = 153832 bytes (41913 bytes decrease) Output file size = 153910 bytes (42189 bytes = 21.51% decrease) --- finished re-building ‘Plotting-tools.Rmd’ --- re-building ‘RRphylo.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-4-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-5-1.png 880x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23594 bytes Input file size = 24476 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20999 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 Output IDAT size = 20658 bytes (2936 bytes decrease) Output file size = 20736 bytes (3740 bytes = 15.28% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138070 bytes Input file size = 138340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 Output IDAT size = 113807 bytes (24263 bytes decrease) Output file size = 113885 bytes (24455 bytes = 17.68% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-7-1.png 1760x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 57094 bytes Input file size = 58024 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51984 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 Output IDAT size = 51534 bytes (5560 bytes decrease) Output file size = 51612 bytes (6412 bytes = 11.05% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-8-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 247821 bytes Input file size = 248259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 Output IDAT size = 169441 bytes (78380 bytes decrease) Output file size = 169519 bytes (78740 bytes = 31.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-9-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-1.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18043 bytes Input file size = 18145 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 Output IDAT size = 14940 bytes (3103 bytes decrease) Output file size = 15018 bytes (3127 bytes = 17.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-2.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23603 bytes Input file size = 23705 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 Output IDAT size = 19755 bytes (3848 bytes decrease) Output file size = 19833 bytes (3872 bytes = 16.33% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-11-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56108 bytes Input file size = 56258 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52420 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Output IDAT size = 52083 bytes (4025 bytes decrease) Output file size = 52161 bytes (4097 bytes = 7.28% decrease) --- finished re-building ‘RRphylo.Rmd’ --- re-building ‘Tree-Manipulation.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-2-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 67692 bytes Input file size = 67866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 Output IDAT size = 57135 bytes (10557 bytes decrease) Output file size = 57213 bytes (10653 bytes = 15.70% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 100843 bytes Input file size = 101065 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 Output IDAT size = 81794 bytes (19049 bytes decrease) Output file size = 81872 bytes (19193 bytes = 18.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 103844 bytes Input file size = 104066 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 Output IDAT size = 85098 bytes (18746 bytes decrease) Output file size = 85176 bytes (18890 bytes = 18.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 107411 bytes Input file size = 107645 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 Output IDAT size = 94233 bytes (13178 bytes decrease) Output file size = 94311 bytes (13334 bytes = 12.39% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 93275 bytes Input file size = 93485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 Output IDAT size = 75215 bytes (18060 bytes decrease) Output file size = 75293 bytes (18192 bytes = 19.46% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49585 bytes Input file size = 49735 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43100 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 Output IDAT size = 43061 bytes (6524 bytes decrease) Output file size = 43139 bytes (6596 bytes = 13.26% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-10-1.png 1200x1200 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54545 bytes Input file size = 54695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 Output IDAT size = 45645 bytes (8900 bytes decrease) Output file size = 45723 bytes (8972 bytes = 16.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-11-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28014 bytes Input file size = 28128 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 Output IDAT size = 22988 bytes (5026 bytes decrease) Output file size = 23066 bytes (5062 bytes = 18.00% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-1.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19899 bytes Input file size = 20781 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 Output IDAT size = 16628 bytes (3271 bytes decrease) Output file size = 16706 bytes (4075 bytes = 19.61% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-2.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29359 bytes Input file size = 29473 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 Output IDAT size = 24575 bytes (4784 bytes decrease) Output file size = 24653 bytes (4820 bytes = 16.35% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-3.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21781 bytes Input file size = 22663 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 Output IDAT size = 18212 bytes (3569 bytes decrease) Output file size = 18290 bytes (4373 bytes = 19.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-13-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28928 bytes Input file size = 29042 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 Output IDAT size = 24231 bytes (4697 bytes decrease) Output file size = 24309 bytes (4733 bytes = 16.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-15-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37097 bytes Input file size = 37223 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 Output IDAT size = 31700 bytes (5397 bytes decrease) Output file size = 31778 bytes (5445 bytes = 14.63% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-17-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33975 bytes Input file size = 34101 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 Output IDAT size = 29419 bytes (4556 bytes decrease) Output file size = 29497 bytes (4604 bytes = 13.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-1.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28239 bytes Input file size = 28353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 Output IDAT size = 23316 bytes (4923 bytes decrease) Output file size = 23394 bytes (4959 bytes = 17.49% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-2.png 1320x660 pixels, 8 bits/pixel, 200 colors in palette Input IDAT size = 15132 bytes Input file size = 15834 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12398 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 Output IDAT size = 12388 bytes (2744 bytes decrease) Output file size = 13078 bytes (2756 bytes = 17.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-3.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28098 bytes Input file size = 28212 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 Output IDAT size = 23759 bytes (4339 bytes decrease) Output file size = 23837 bytes (4375 bytes = 15.51% decrease) --- finished re-building ‘Tree-Manipulation.Rmd’ --- re-building ‘overfitRR.Rmd’ using rmarkdown_notangle --- finished re-building ‘overfitRR.Rmd’ --- re-building ‘search.conv.Rmd’ using rmarkdown_notangle Quitting from lines 229-306 [noconv] (search.conv.Rmd) Error: processing vignette 'search.conv.Rmd' failed with diagnostics: could not find function "mvSIM" --- failed re-building ‘search.conv.Rmd’ --- re-building ‘search.shift.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-2-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38295 bytes Input file size = 38421 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 Output IDAT size = 30597 bytes (7698 bytes decrease) Output file size = 30675 bytes (7746 bytes = 20.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-6-1.png 1540x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 532464 bytes Input file size = 533310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 Output IDAT size = 389767 bytes (142697 bytes decrease) Output file size = 389845 bytes (143465 bytes = 26.90% decrease) --- finished re-building ‘search.shift.Rmd’ --- re-building ‘search.trend.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-2-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 251007 bytes Input file size = 251445 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 Output IDAT size = 197330 bytes (53677 bytes decrease) Output file size = 197408 bytes (54037 bytes = 21.49% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-5-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 339658 bytes Input file size = 340228 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 Output IDAT size = 241740 bytes (97918 bytes decrease) Output file size = 241818 bytes (98410 bytes = 28.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-9-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51264 bytes Input file size = 51414 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49171 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Output IDAT size = 47721 bytes (3543 bytes decrease) Output file size = 47799 bytes (3615 bytes = 7.03% decrease) --- finished re-building ‘search.trend.Rmd’ --- re-building ‘swapONE.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-2-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25941 bytes Input file size = 26055 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 Output IDAT size = 23260 bytes (2681 bytes decrease) Output file size = 23338 bytes (2717 bytes = 10.43% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-3-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28446 bytes Input file size = 28560 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 Output IDAT size = 24784 bytes (3662 bytes decrease) Output file size = 24862 bytes (3698 bytes = 12.95% decrease) --- finished re-building ‘swapONE.Rmd’ SUMMARY: processing the following file failed: ‘search.conv.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Plotting-tools.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129052 bytes Input file size = 129310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103405 Output IDAT size = 103405 bytes (25647 bytes decrease) Output file size = 103483 bytes (25827 bytes = 19.97% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127347 bytes Input file size = 127605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102911 Output IDAT size = 102911 bytes (24436 bytes decrease) Output file size = 102989 bytes (24616 bytes = 19.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 125715 bytes Input file size = 125973 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101651 Output IDAT size = 101651 bytes (24064 bytes decrease) Output file size = 101729 bytes (24244 bytes = 19.25% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105846 bytes Input file size = 106068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87795 Output IDAT size = 87795 bytes (18051 bytes decrease) Output file size = 87873 bytes (18195 bytes = 17.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105668 bytes Input file size = 105890 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 87094 Output IDAT size = 87094 bytes (18574 bytes decrease) Output file size = 87172 bytes (18718 bytes = 17.68% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43744 bytes Input file size = 43882 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40175 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39570 Output IDAT size = 39570 bytes (4174 bytes decrease) Output file size = 39648 bytes (4234 bytes = 9.65% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110106 bytes Input file size = 110340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89586 Output IDAT size = 89586 bytes (20520 bytes decrease) Output file size = 89664 bytes (20676 bytes = 18.74% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29201 bytes Input file size = 29315 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28914 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26217 Output IDAT size = 26217 bytes (2984 bytes decrease) Output file size = 26295 bytes (3020 bytes = 10.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110303 bytes Input file size = 110537 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89519 Output IDAT size = 89519 bytes (20784 bytes decrease) Output file size = 89597 bytes (20940 bytes = 18.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 193926 bytes Input file size = 194280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 147677 Output IDAT size = 147677 bytes (46249 bytes decrease) Output file size = 147755 bytes (46525 bytes = 23.95% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 218772 bytes Input file size = 219162 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 166257 Output IDAT size = 166257 bytes (52515 bytes decrease) Output file size = 166335 bytes (52827 bytes = 24.10% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129616 bytes Input file size = 129874 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102537 Output IDAT size = 102537 bytes (27079 bytes decrease) Output file size = 102615 bytes (27259 bytes = 20.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-2.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 143796 bytes Input file size = 144078 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 110872 Output IDAT size = 110872 bytes (32924 bytes decrease) Output file size = 110950 bytes (33128 bytes = 22.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-3.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 145636 bytes Input file size = 145918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 106122 Output IDAT size = 106122 bytes (39514 bytes decrease) Output file size = 106200 bytes (39718 bytes = 27.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-4.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95806 bytes Input file size = 96016 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75651 Output IDAT size = 75651 bytes (20155 bytes decrease) Output file size = 75729 bytes (20287 bytes = 21.13% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 68253 bytes Input file size = 68427 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50625 Output IDAT size = 50625 bytes (17628 bytes decrease) Output file size = 50703 bytes (17724 bytes = 25.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 270156 bytes Input file size = 270618 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 235100 Output IDAT size = 235100 bytes (35056 bytes decrease) Output file size = 235178 bytes (35440 bytes = 13.10% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 69835 bytes Input file size = 70009 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52235 Output IDAT size = 52235 bytes (17600 bytes decrease) Output file size = 52313 bytes (17696 bytes = 25.28% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195906 bytes Input file size = 196260 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 137647 Output IDAT size = 137647 bytes (58259 bytes decrease) Output file size = 137725 bytes (58535 bytes = 29.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 234300 bytes Input file size = 234714 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 170685 Output IDAT size = 170685 bytes (63615 bytes decrease) Output file size = 170763 bytes (63951 bytes = 27.25% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-18-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41508 bytes Input file size = 41646 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39895 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38947 Output IDAT size = 38947 bytes (2561 bytes decrease) Output file size = 39025 bytes (2621 bytes = 6.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 139237 bytes Input file size = 139507 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102395 Output IDAT size = 102395 bytes (36842 bytes decrease) Output file size = 102473 bytes (37034 bytes = 26.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 105694 bytes Input file size = 105916 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79977 Output IDAT size = 79977 bytes (25717 bytes decrease) Output file size = 80055 bytes (25861 bytes = 24.42% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-21-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37589 bytes Input file size = 37715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36331 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 35237 Output IDAT size = 35237 bytes (2352 bytes decrease) Output file size = 35315 bytes (2400 bytes = 6.36% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 136335 bytes Input file size = 136605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101420 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101420 Output IDAT size = 101420 bytes (34915 bytes decrease) Output file size = 101498 bytes (35107 bytes = 25.70% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111248 bytes Input file size = 111482 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82070 Output IDAT size = 82070 bytes (29178 bytes decrease) Output file size = 82148 bytes (29334 bytes = 26.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124900 bytes Input file size = 125158 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 96205 Output IDAT size = 96205 bytes (28695 bytes decrease) Output file size = 96283 bytes (28875 bytes = 23.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-2.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 179587 bytes Input file size = 179917 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127443 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127443 Output IDAT size = 127443 bytes (52144 bytes decrease) Output file size = 127521 bytes (52396 bytes = 29.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-3.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 119620 bytes Input file size = 119866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88365 Output IDAT size = 88365 bytes (31255 bytes decrease) Output file size = 88443 bytes (31423 bytes = 26.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-4.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 195745 bytes Input file size = 196099 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153832 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 153832 Output IDAT size = 153832 bytes (41913 bytes decrease) Output file size = 153910 bytes (42189 bytes = 21.51% decrease) --- finished re-building ‘Plotting-tools.Rmd’ --- re-building ‘RRphylo.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-4-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-5-1.png 880x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23594 bytes Input file size = 24476 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20999 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20658 Output IDAT size = 20658 bytes (2936 bytes decrease) Output file size = 20736 bytes (3740 bytes = 15.28% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138070 bytes Input file size = 138340 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 113807 Output IDAT size = 113807 bytes (24263 bytes decrease) Output file size = 113885 bytes (24455 bytes = 17.68% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-7-1.png 1760x880 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 57094 bytes Input file size = 58024 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51984 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 51534 Output IDAT size = 51534 bytes (5560 bytes decrease) Output file size = 51612 bytes (6412 bytes = 11.05% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-8-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 247821 bytes Input file size = 248259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 169441 Output IDAT size = 169441 bytes (78380 bytes decrease) Output file size = 169519 bytes (78740 bytes = 31.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-9-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13870 bytes Input file size = 13960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12106 Output IDAT size = 12106 bytes (1764 bytes decrease) Output file size = 12184 bytes (1776 bytes = 12.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-1.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18043 bytes Input file size = 18145 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14940 Output IDAT size = 14940 bytes (3103 bytes decrease) Output file size = 15018 bytes (3127 bytes = 17.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-2.png 660x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23603 bytes Input file size = 23705 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19755 Output IDAT size = 19755 bytes (3848 bytes decrease) Output file size = 19833 bytes (3872 bytes = 16.33% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-11-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56108 bytes Input file size = 56258 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52420 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 52083 Output IDAT size = 52083 bytes (4025 bytes decrease) Output file size = 52161 bytes (4097 bytes = 7.28% decrease) --- finished re-building ‘RRphylo.Rmd’ --- re-building ‘Tree-Manipulation.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-2-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 67692 bytes Input file size = 67866 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57135 Output IDAT size = 57135 bytes (10557 bytes decrease) Output file size = 57213 bytes (10653 bytes = 15.70% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-3-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 100843 bytes Input file size = 101065 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81794 Output IDAT size = 81794 bytes (19049 bytes decrease) Output file size = 81872 bytes (19193 bytes = 18.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-5-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 103844 bytes Input file size = 104066 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85098 Output IDAT size = 85098 bytes (18746 bytes decrease) Output file size = 85176 bytes (18890 bytes = 18.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-6-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 107411 bytes Input file size = 107645 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94233 Output IDAT size = 94233 bytes (13178 bytes decrease) Output file size = 94311 bytes (13334 bytes = 12.39% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-7-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 93275 bytes Input file size = 93485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75215 Output IDAT size = 75215 bytes (18060 bytes decrease) Output file size = 75293 bytes (18192 bytes = 19.46% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-8-1.png 1320x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49585 bytes Input file size = 49735 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43100 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 43061 Output IDAT size = 43061 bytes (6524 bytes decrease) Output file size = 43139 bytes (6596 bytes = 13.26% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-10-1.png 1200x1200 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54545 bytes Input file size = 54695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45645 Output IDAT size = 45645 bytes (8900 bytes decrease) Output file size = 45723 bytes (8972 bytes = 16.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-11-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28014 bytes Input file size = 28128 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22988 Output IDAT size = 22988 bytes (5026 bytes decrease) Output file size = 23066 bytes (5062 bytes = 18.00% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-1.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19899 bytes Input file size = 20781 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16628 Output IDAT size = 16628 bytes (3271 bytes decrease) Output file size = 16706 bytes (4075 bytes = 19.61% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-2.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29359 bytes Input file size = 29473 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24575 Output IDAT size = 24575 bytes (4784 bytes decrease) Output file size = 24653 bytes (4820 bytes = 16.35% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-3.png 1200x600 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21781 bytes Input file size = 22663 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18212 Output IDAT size = 18212 bytes (3569 bytes decrease) Output file size = 18290 bytes (4373 bytes = 19.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-13-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28928 bytes Input file size = 29042 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24231 Output IDAT size = 24231 bytes (4697 bytes decrease) Output file size = 24309 bytes (4733 bytes = 16.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-15-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37097 bytes Input file size = 37223 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31700 Output IDAT size = 31700 bytes (5397 bytes decrease) Output file size = 31778 bytes (5445 bytes = 14.63% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-17-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33975 bytes Input file size = 34101 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29419 Output IDAT size = 29419 bytes (4556 bytes decrease) Output file size = 29497 bytes (4604 bytes = 13.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-1.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28239 bytes Input file size = 28353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23316 Output IDAT size = 23316 bytes (4923 bytes decrease) Output file size = 23394 bytes (4959 bytes = 17.49% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-2.png 1320x660 pixels, 8 bits/pixel, 200 colors in palette Input IDAT size = 15132 bytes Input file size = 15834 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12398 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12388 Output IDAT size = 12388 bytes (2744 bytes decrease) Output file size = 13078 bytes (2756 bytes = 17.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-3.png 1320x660 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28098 bytes Input file size = 28212 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23759 Output IDAT size = 23759 bytes (4339 bytes decrease) Output file size = 23837 bytes (4375 bytes = 15.51% decrease) --- finished re-building ‘Tree-Manipulation.Rmd’ --- re-building ‘overfitRR.Rmd’ using rmarkdown_notangle --- finished re-building ‘overfitRR.Rmd’ --- re-building ‘search.conv.Rmd’ using rmarkdown_notangle Quitting from lines 229-306 [noconv] (search.conv.Rmd) Error: processing vignette 'search.conv.Rmd' failed with diagnostics: could not find function "mvSIM" --- failed re-building ‘search.conv.Rmd’ --- re-building ‘search.shift.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-2-1.png 880x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38295 bytes Input file size = 38421 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30597 Output IDAT size = 30597 bytes (7698 bytes decrease) Output file size = 30675 bytes (7746 bytes = 20.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-6-1.png 1540x1320 pixels, 3x8 bits/pixel, RGB Input IDAT size = 532464 bytes Input file size = 533310 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 389767 Output IDAT size = 389767 bytes (142697 bytes decrease) Output file size = 389845 bytes (143465 bytes = 26.90% decrease) --- finished re-building ‘search.shift.Rmd’ --- re-building ‘search.trend.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-2-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 251007 bytes Input file size = 251445 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 197330 Output IDAT size = 197330 bytes (53677 bytes decrease) Output file size = 197408 bytes (54037 bytes = 21.49% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-5-1.png 1760x880 pixels, 3x8 bits/pixel, RGB Input IDAT size = 339658 bytes Input file size = 340228 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 241740 Output IDAT size = 241740 bytes (97918 bytes decrease) Output file size = 241818 bytes (98410 bytes = 28.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-9-1.png 1760x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51264 bytes Input file size = 51414 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49171 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 47721 Output IDAT size = 47721 bytes (3543 bytes decrease) Output file size = 47799 bytes (3615 bytes = 7.03% decrease) --- finished re-building ‘search.trend.Rmd’ --- re-building ‘swapONE.Rmd’ using rmarkdown_notangle ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-2-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25941 bytes Input file size = 26055 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23260 Output IDAT size = 23260 bytes (2681 bytes decrease) Output file size = 23338 bytes (2717 bytes = 10.43% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-3-1.png 1200x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28446 bytes Input file size = 28560 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24784 Output IDAT size = 24784 bytes (3662 bytes decrease) Output file size = 24862 bytes (3698 bytes = 12.95% decrease) --- finished re-building ‘swapONE.Rmd’ SUMMARY: processing the following file failed: ‘search.conv.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc