Last updated on 2026-10-06 06:51:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5.3 | 16.43 | 184.91 | 201.34 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 35.00 | 331.33 | 366.33 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 33.00 | 311.87 | 344.87 | OK | |
| r-devel-windows-x86_64 | 1.5.3 | 19.00 | 195.00 | 214.00 | ERROR | |
| r-patched-linux-x86_64 | 1.5.3 | 17.32 | 175.97 | 193.29 | OK | |
| r-release-linux-x86_64 | 1.5.3 | OK | ||||
| r-release-macos-arm64 | 2.0.1 | 10.00 | 112.00 | 122.00 | OK | |
| r-release-macos-x86_64 | 2.0.1 | 31.00 | 522.00 | 553.00 | OK | |
| r-release-windows-x86_64 | 1.5.3 | 19.00 | 189.00 | 208.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | ERROR | ||||
| r-oldrel-macos-x86_64 | 2.0.1 | 30.00 | 423.00 | 453.00 | OK |
Version: 1.5.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Win Cowger <wincowger@gmail.com>’
Found the following (possibly) invalid URLs:
URL: https://app.gitter.im/#/room/#Open-Specy_community:gitter.im
From: README.md
Message: Invalid URL: '#' not allowed in fragment
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [33s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OpenSpecy)
>
> library(data.table)
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> setDTthreads(2)
>
> test_check("OpenSpecy")
Saving _problems/test-read_opus-7.R
Saving _problems/test-read_opus-10.R
[ FAIL 2 | WARN 0 | SKIP 6 | PASS 498 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-def_features.R:118:3', 'test-def_features.R:139:3',
'test-manage_lib.R:7:3', 'test-manage_lib.R:28:3', 'test-match_spec.R:63:3',
'test-match_spec.R:201:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-read_opus.R:6:3'): opus files are read correctly ─────────────
Expected `read_opus(read_extdata("ftir_ps.0"))` to run silently.
Actual noise: warnings.
── Failure ('test-read_opus.R:9:3'): opus files are read correctly ─────────────
Expected `read_opus(c(read_extdata("ftir_ps.0"), read_extdata("ftir_ps.0")))` to run silently.
Actual noise: warnings.
[ FAIL 2 | WARN 0 | SKIP 6 | PASS 498 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.5.3
Check: tests
Result: ERROR
Running 'testthat.R' [29s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(OpenSpecy)
>
> library(data.table)
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> setDTthreads(2)
>
> test_check("OpenSpecy")
Saving _problems/test-read_opus-7.R
Saving _problems/test-read_opus-10.R
[ FAIL 2 | WARN 0 | SKIP 6 | PASS 498 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-def_features.R:118:3', 'test-def_features.R:139:3',
'test-manage_lib.R:7:3', 'test-manage_lib.R:28:3', 'test-match_spec.R:63:3',
'test-match_spec.R:201:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-read_opus.R:6:3'): opus files are read correctly ─────────────
Expected `read_opus(read_extdata("ftir_ps.0"))` to run silently.
Actual noise: warnings.
── Failure ('test-read_opus.R:9:3'): opus files are read correctly ─────────────
Expected `read_opus(c(read_extdata("ftir_ps.0"), read_extdata("ftir_ps.0")))` to run silently.
Actual noise: warnings.
[ FAIL 2 | WARN 0 | SKIP 6 | PASS 498 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [72s/73s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OpenSpecy)
>
> library(data.table)
> setDTthreads(2)
>
> test_check("OpenSpecy")
Particle analysis [file-backed source]: read into memory (1 regions; 16 spectra; 4 bands)
Particle analysis [Region1]: memory materialization (region 1/1; 16 spectra)
Particle analysis [Region1]: memory materialization complete (elapsed 0.0 s)
Particle analysis [Region1]: read (sample 1 of 1)
Particle analysis [Region1]: signal/noise
Particle analysis [Region1]: particle detection and collapse
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [file-backed source]: read into memory (1 regions; 16 spectra; 4 bands)
Particle analysis [Region1]: memory materialization (region 1/1; 16 spectra)
Particle analysis [Region1]: memory materialization complete (elapsed 0.0 s)
Particle analysis [Region1]: read (sample 1 of 1)
Particle analysis [Region1]: signal/noise
Particle analysis [Region1]: particle detection and collapse
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: reuse cached particle means
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: reuse cached particle means
2026-10-06 12:56:17.540 R[75917:417236] XType: Using static font registry.
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: streaming signal/noise (16 spectra)
Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means
FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
Particle analysis [Region1]: streaming particle means (chunk 1/1; 4/4 spectra (100%); elapsed 0.0 s)
FileSpecs collapse complete in 0.01 seconds.
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: streaming signal/noise (16 spectra)
Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means
FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
Particle analysis [Region1]: streaming particle means (chunk 1/1; 4/4 spectra (100%); elapsed 0.0 s)
FileSpecs collapse complete in 0.01 seconds.
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
FileSpecs collapse complete in 0.01 seconds.
FileSpecs collapse: 16 source spectra; 4 retained; 2 connected units.
FileSpecs collapse complete in 0.02 seconds.
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: streaming signal/noise (16 spectra)
Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means
FileSpecs collapse: 16 source spectra; 16 retained; 1 connected units.
Particle analysis [Region1]: streaming particle means (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
FileSpecs collapse complete in 0.01 seconds.
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: streaming signal/noise (16 spectra)
Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: streaming signal/noise (16 spectra)
Particle analysis [Region1]: streaming signal/noise (chunk 1/6; 3/16 spectra (18%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 2/6; 6/16 spectra (37%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 3/6; 9/16 spectra (56%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 4/6; 12/16 spectra (75%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 5/6; 15/16 spectra (93%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 6/6; 16/16 spectra (100%); elapsed 0.0 s)
Particle analysis [Region1]: streaming pixel identification
Particle analysis [Region1]: streaming pixel identification (chunk 1/2; 3/4 spectra (75%); elapsed 0.0 s)
Particle analysis [Region1]: streaming pixel identification (chunk 2/2; 4/4 spectra (100%); elapsed 0.1 s)
Particle analysis [Region1]: streaming particle means
FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
Particle analysis [Region1]: streaming particle means (chunk 1/2; 3/4 spectra (75%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means (chunk 2/2; 4/4 spectra (100%); elapsed 0.0 s)
FileSpecs collapse complete in 0.01 seconds.
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [sample_1]: read (sample 1 of 1)
Particle analysis [sample_1]: signal/noise
Particle analysis [sample_1]: library matching
Particle analysis [sample_1]: outputs
Particle analysis [sample_1]: complete
Particle analysis [Region1]: region (1 of 1)
Particle analysis [Region1]: index
Particle analysis [Region1]: streaming signal/noise (16 spectra)
Particle analysis [Region1]: streaming signal/noise (chunk 1/4; 4/16 spectra (25%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 2/4; 8/16 spectra (50%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 3/4; 12/16 spectra (75%); elapsed 0.0 s)
Particle analysis [Region1]: streaming signal/noise (chunk 4/4; 16/16 spectra (100%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means
FileSpecs collapse: 16 source spectra; 12 retained; 1 connected units.
Particle analysis [Region1]: streaming particle means (chunk 1/4; 2/12 spectra (16%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means (chunk 2/4; 6/12 spectra (50%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means (chunk 3/4; 10/12 spectra (83%); elapsed 0.0 s)
Particle analysis [Region1]: streaming particle means (chunk 4/4; 12/12 spectra (100%); elapsed 0.0 s)
FileSpecs collapse complete in 0.03 seconds.
Particle analysis [Region1]: library matching
Particle analysis [Region1]: outputs
Particle analysis [Region1]: complete
Particle analysis [particle-map]: read (sample 1 of 1)
Particle analysis [particle-map]: signal/noise
Particle analysis [particle-map]: particle detection and collapse
Particle analysis [particle-map]: library matching
Particle analysis [particle-map]: outputs
Particle analysis [particle-map]: complete
split_h5: copying Region2 (2/2)
split_h5: copying 10 (4 spectra in 1 region(s); 2/2)
split_h5: reading 2 (4 spectra; 2/2)
Attaching package: 'shinyjs'
The following object is masked from 'package:shiny':
runExample
The following objects are masked from 'package:methods':
removeClass, show
Attaching package: 'shinyWidgets'
The following object is masked from 'package:shinyjs':
alert
Attaching package: 'dplyr'
The following objects are masked from 'package:data.table':
between, first, last
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
last_plot
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
layout
Attaching package: 'DT'
The following objects are masked from 'package:shiny':
dataTableOutput, renderDataTable
Attaching package: 'bs4Dash'
The following object is masked from 'package:shinyWidgets':
progressBar
The following objects are masked from 'package:shiny':
actionButton, column, insertTab, navbarMenu, tabsetPanel
The following object is masked from 'package:graphics':
box
Attaching package: 'reshape2'
The following objects are masked from 'package:data.table':
dcast, melt
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
No scatter mode specifed:
Setting the mode to markers
Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
Fetching Open Specy reference libraries from AWS ...
Fetching medoid derivative library...
trying URL 'https://d2jrxerjcsjhs7.cloudfront.net/medoid_derivative.rds'
Content type 'application/x-www-form-urlencoded' length 4945588 bytes (4.7 MB)
==================================================
downloaded 4.7 MB
Use 'load_lib()' to load the library
Particle analysis [sample_1]: read (sample 1 of 1)
Particle analysis [sample_1]: signal/noise
Particle analysis [sample_1]: particle detection and collapse
Particle analysis [sample_1]: library matching
Particle analysis [sample_1]: outputs
Particle analysis [sample_1]: complete
Particle analysis [particle-sample-a-1288d7ca4e8a]: read (sample 1 of 2)
Particle analysis [particle-sample-a-1288d7ca4e8a]: signal/noise
Particle analysis [particle-sample-a-1288d7ca4e8a]: particle detection and collapse
Particle analysis [particle-sample-a-1288d7ca4e8a]: library matching
Particle analysis [particle-sample-a-1288d7ca4e8a]: outputs
Particle analysis [particle-sample-a-1288d7ca4e8a]: complete
Particle analysis [particle-sample-b-1288d72ea4a04]: read (sample 2 of 2)
Particle analysis [particle-sample-b-1288d72ea4a04]: signal/noise
Particle analysis [particle-sample-b-1288d72ea4a04]: particle detection and collapse
Particle analysis [particle-sample-b-1288d72ea4a04]: library matching
Particle analysis [particle-sample-b-1288d72ea4a04]: outputs
Particle analysis [particle-sample-b-1288d72ea4a04]: complete
Particle analysis [sample_1]: read (sample 1 of 1)
Particle analysis [sample_1]: signal/noise
Particle analysis [sample_1]: particle detection and collapse
Particle analysis [sample_1]: library matching
Particle analysis [sample_1]: outputs
Particle analysis [sample_1]: complete
Particle analysis [sample_1]: read (sample 1 of 1)
Particle analysis [sample_1]: signal/noise
Particle analysis [sample_1]: read (sample 1 of 1)
Particle analysis [sample_1]: signal/noise
S/N thresholds retained every map pixel in 'sample_1'; continuing with particle_id_strategy = 'all_cell_id'.
Particle analysis [sample_1]: library matching
Particle analysis [sample_1]: outputs
Particle analysis [sample_1]: complete
Particle analysis [small]: read (sample 1 of 1)
Particle analysis [small]: signal/noise
Particle analysis [small]: particle detection and collapse
Particle analysis [small]: library matching
Particle analysis [small]: outputs
Particle analysis [small]: complete
Particle analysis [sample_1]: read (sample 1 of 1)
Particle analysis [sample_1]: signal/noise
Particle analysis [sample_1]: library matching
Particle analysis [sample_1]: outputs
Particle analysis [sample_1]: complete
Particle analysis [sample_1]: read (sample 1 of 1)
Particle analysis [sample_1]: signal/noise
Particle analysis [sample_1]: library matching
Particle analysis [sample_1]: outputs
Particle analysis [sample_1]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: processing recipe 1/2 (raw)
build_lib [0.0s]: processing recipe 2/2 (relative)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: restricting the wavenumber range
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: restricting the wavenumber range
build_lib [0.0s]: starting
build_lib [0.0s]: using 2 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 2 source object(s)
build_lib [0.0s]: preparing source object 1/2
build_lib [0.0s]: preparing source object 2/2
build_lib [0.0s]: combining 2 same-axis source object(s)
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: standardized source keys (filled=2; conflicts=0)
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: joining metadata lookup 1/1
build_lib [0.0s]: metadata lookup 1/1 complete (matched=8; unmatched=0)
build_lib [0.0s]: joining the material hierarchy
build_lib [0.0s]: material hierarchy complete (unmatched=0)
build_lib [0.0s]: processing recipe 1/3 (raw)
build_lib [0.0s]: calculating signal-to-noise (raw)
build_lib [0.0s]: assessing spectra (raw)
build_lib [0.0s]: processing recipe 2/3 (derivative)
build_lib [0.0s]: calculating signal-to-noise (derivative)
build_lib [0.0s]: assessing spectra (derivative)
build_lib [0.0s]: processing recipe 3/3 (nobaseline)
build_lib [0.0s]: calculating signal-to-noise (nobaseline)
build_lib [0.1s]: assessing spectra (nobaseline)
build_lib [0.1s]: complete
Saving _problems/test-build_lib-913.R
build_lib [0.0s]: starting
build_lib [0.0s]: using one in-memory OpenSpecy source
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: joining metadata lookup 1/1
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using one in-memory OpenSpecy source
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: joining metadata lookup 1/1
build_lib [0.0s]: processing recipe 1/1 (raw)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 2 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 2 source object(s)
build_lib [0.0s]: preparing source object 1/2
build_lib [0.0s]: preparing source object 2/2
build_lib [0.0s]: merging 2 source object(s) with c_spec()
build_lib [0.0s]: processing recipe 1/3 (raw)
build_lib [0.0s]: processing recipe 2/3 (derivative)
build_lib [0.0s]: processing recipe 3/3 (nobaseline)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
build_lib [0.0s]: preparing 1 source object(s)
build_lib [0.0s]: preparing source object 1/1
build_lib [0.0s]: processing recipe 1/1 (nobaseline)
build_lib [0.0s]: complete
build_lib [0.0s]: starting
build_lib [0.0s]: reading path 1/3 (raman_hdpe.csv)
build_lib [0.2s]: reading path 2/3 (ftir_ldpe_soil.asp)
build_lib [0.4s]: reading path 3/3 (raman_atacamit.spc)
build_lib [0.7s]: streamed 3 source object(s) from 3 path(s)
build_lib [0.7s]: merging 3 source object(s) with c_spec()
build_lib [0.9s]: joining metadata lookup 1/1
build_lib [0.9s]: metadata lookup 1/1 complete (matched=3; unmatched=0)
build_lib [0.9s]: processing recipe 1/1 (raw)
build_lib [0.9s]: complete
object 'x' needs to be a list of 'OpenSpecy' objects; nothing to concatenate, returning 'x'
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
No scatter mode specifed:
Setting the mode to markers
Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
A line object has been specified, but lines is not in the mode
Adding lines to the mode...
A line object has been specified, but lines is not in the mode
Adding lines to the mode...
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
No scatter mode specifed:
Setting the mode to markers
Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
A line object has been specified, but lines is not in the mode
Adding lines to the mode...
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
No scatter mode specifed:
Setting the mode to markers
Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
A line object has been specified, but lines is not in the mode
Adding lines to the mode...
Fetching Open Specy reference libraries from AWS ...
Fetching medoid derivative library...
Use 'load_lib()' to load the library
Launching bundled OpenSpecy Shiny app from: /Volumes/Temp/tmp/RtmpwWX9QS/OpenSpecy-testthat-run-app-launch
object 'x' needs to be a list of 'OpenSpecy' objects; nothing to concatenate, returning 'x'
[ FAIL 1 | WARN 31 | SKIP 28 | PASS 3746 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (7): 'test-app-onboarding.R:252:3', 'test-build_lib.R:2376:3',
'test-def_features.R:134:3', 'test-def_features.R:155:3',
'test-manage_lib.R:76:3', 'test-match_spec.R:156:3',
'test-match_spec.R:310:3'
• Repository source files are not in the package tarball (1):
'test-shinylive_wasm.R:285:5'
• Repository-only hosted deployment files are not in the package tarball (1):
'test-shinylive_wasm.R:891:5'
• Repository-only hosted-site sources are not in the package tarball (1):
'test-shinylive_wasm.R:1182:5'
• Repository-only wasm deployment tools are not in the package tarball (9):
'test-shinylive_wasm.R:128:3', 'test-shinylive_wasm.R:228:3',
'test-shinylive_wasm.R:321:5', 'test-shinylive_wasm.R:332:3',
'test-shinylive_wasm.R:413:3', 'test-shinylive_wasm.R:469:3',
'test-shinylive_wasm.R:505:3', 'test-shinylive_wasm.R:542:3',
'test-shinylive_wasm.R:604:3'
• Repository-only wasm preflight scripts are not in the package tarball (1):
'test-shinylive_wasm.R:730:5'
• Repository-only workflow files are not in the package tarball (2):
'test-shinylive_wasm.R:635:5', 'test-shinylive_wasm.R:864:5'
• Repository-only workspace path contract is not in the package tarball (1):
'test-shinylive_wasm.R:845:5'
• correct_spike.OpenSpecy is registered when documentation is regenerated (1):
'test-run_app.R:2002:3'
• repository-only reference workflow tables are not installed (4):
'test-build_lib.R:1672:3', 'test-build_lib.R:1858:3',
'test-build_lib.R:3144:3', 'test-build_lib.R:3181:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-build_lib.R:913:3'): build_lib() runs default joins, processing, SNR, and assessment ──
Expected `all(vapply(built, check_OpenSpecy, logical(1)))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 31 | SKIP 28 | PASS 3746 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64