Last updated on 2025-11-04 06:49:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.1 | 7.83 | 556.44 | 564.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.1 | 4.17 | 167.26 | 171.43 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.1 | 27.00 | 367.27 | 394.27 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.5.1 | 16.00 | 367.44 | 383.44 | ERROR | |
| r-devel-windows-x86_64 | 0.5.1 | 10.00 | 226.00 | 236.00 | ERROR | |
| r-patched-linux-x86_64 | 0.5.1 | 6.70 | 527.82 | 534.52 | OK | |
| r-release-linux-x86_64 | 0.5.1 | 7.08 | 225.19 | 232.27 | ERROR | |
| r-release-macos-arm64 | 0.5.1 | 3.00 | 206.00 | 209.00 | OK | |
| r-release-macos-x86_64 | 0.5.1 | 6.00 | 327.00 | 333.00 | OK | |
| r-release-windows-x86_64 | 0.5.1 | 10.00 | 218.00 | 228.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.5.1 | 3.00 | 217.00 | 220.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.5.1 | 5.00 | 292.00 | 297.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.5.1 | 13.00 | 309.00 | 322.00 | ERROR |
Version: 0.5.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘database_characteristics.Rmd’ using rmarkdown
Quitting from database_characteristics.Rmd:32-39 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'database_characteristics.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘database_characteristics.Rmd’
--- re-building ‘missing_data.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘missing_data.Rmd’
--- re-building ‘summarise_clinical_tables_records.Rmd’ using rmarkdown
Quitting from summarise_clinical_tables_records.Rmd:35-41 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_clinical_tables_records.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘summarise_clinical_tables_records.Rmd’
--- re-building ‘summarise_concept_id_counts.Rmd’ using rmarkdown
Quitting from summarise_concept_id_counts.Rmd:32-41 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_concept_id_counts.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘summarise_concept_id_counts.Rmd’
--- re-building ‘summarise_observation_period.Rmd’ using rmarkdown
Quitting from summarise_observation_period.Rmd:34-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_observation_period.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘summarise_observation_period.Rmd’
SUMMARY: processing the following files failed:
‘database_characteristics.Rmd’
‘summarise_clinical_tables_records.Rmd’
‘summarise_concept_id_counts.Rmd’ ‘summarise_observation_period.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 0.5.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘database_characteristics.Rmd’ using rmarkdown
Quitting from database_characteristics.Rmd:32-39 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'database_characteristics.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘database_characteristics.Rmd’
--- re-building ‘missing_data.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘missing_data.Rmd’
--- re-building ‘summarise_clinical_tables_records.Rmd’ using rmarkdown
Quitting from summarise_clinical_tables_records.Rmd:35-41 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_clinical_tables_records.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘summarise_clinical_tables_records.Rmd’
--- re-building ‘summarise_concept_id_counts.Rmd’ using rmarkdown
Quitting from summarise_concept_id_counts.Rmd:32-41 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_concept_id_counts.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘summarise_concept_id_counts.Rmd’
--- re-building ‘summarise_observation_period.Rmd’ using rmarkdown
Quitting from summarise_observation_period.Rmd:34-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_observation_period.Rmd' failed with diagnostics:
✖ `datasetName` a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k.
! `datasetName` must be a choice between: GiBleed, empty_cdm, synpuf-1k_5.3,
synpuf-1k_5.4, synthea-allergies-10k, synthea-anemia-10k,
synthea-breast_cancer-10k, synthea-contraceptives-10k, synthea-covid19-10k,
synthea-covid19-200k, synthea-dermatitis-10k, synthea-heart-10k,
synthea-hiv-10k, synthea-lung_cancer-10k, synthea-medications-10k,
synthea-metabolic_syndrome-10k, synthea-opioid_addiction-10k,
synthea-rheumatoid_arthritis-10k, …, synthea-veterans-10k, and
synthea-weight_loss-10k; with length = 1; it can not contain NA; it can not
be NULL.
--- failed re-building ‘summarise_observation_period.Rmd’
SUMMARY: processing the following files failed:
‘database_characteristics.Rmd’
‘summarise_clinical_tables_records.Rmd’
‘summarise_concept_id_counts.Rmd’ ‘summarise_observation_period.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.5.1
Check: installed package size
Result: NOTE
installed size is 18.1Mb
sub-directories of 1Mb or more:
doc 17.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64