Last updated on 2024-07-27 17:57:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 2.1.3 | 559.58 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.3 | 545.62 | OK | |||
| r-devel-windows-x86_64 | 2.1.3 | 25.00 | 571.00 | 596.00 | OK | |
| r-release-macos-arm64 | 2.1.3 | 79.00 | ERROR | |||
| r-release-macos-x86_64 | 2.1.3 | 263.00 | ERROR | |||
| r-oldrel-macos-arm64 | 2.1.3 | 88.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.1.3 | 190.00 | ERROR |
Version: 2.1.3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Hsapiens.UCSC.hg19',
'BSgenome.Mmusculus.UCSC.mm10'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.3
Check: examples
Result: ERROR
Running examples in ‘MicroSEC-Ex.R’ failed
The error most likely occurred in:
> ### Name: fun_load_genome
> ### Title: Genome loading function.
> ### Aliases: fun_load_genome
>
> ### ** Examples
>
> fun_load_genome("Human")
Error: Install BSgenome.Hsapiens.UCSC.hg38 package.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘my-vignette.Rmd’ using rmarkdown
Quitting from lines 125-195 [analysis] (my-vignette.Rmd)
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
--- failed re-building ‘my-vignette.Rmd’
SUMMARY: processing the following file failed:
‘my-vignette.Rmd’
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 2.1.3
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘my-vignette.Rmd’
...
> adapter_2 <- "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT"
> organism <- "hg38"
> df_mutation <- fun_load_mutation(system.file("extdata",
+ "mutation_list.tsv", package = "MicroSEC"), "sample", BSgenome.Hsapiens.UCSC.hg38::BS .... [TRUNCATED]
When sourcing ‘my-vignette.R’:
Execution halted
‘my-vignette.Rmd’ using ‘UTF-8’... failed
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.3
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
...
--- re-building ‘my-vignette.Rmd’ using rmarkdown
Quitting from lines 125-195 [analysis] (my-vignette.Rmd)
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
--- failed re-building ‘my-vignette.Rmd’
SUMMARY: processing the following file failed:
‘my-vignette.Rmd’
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64