Last updated on 2025-08-27 07:51:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 16.08 | 172.46 | 188.54 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 12.83 | 120.05 | 132.88 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 290.09 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 288.42 | OK | |||
| r-devel-windows-x86_64 | 1.0.1 | 21.00 | 161.00 | 182.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 16.62 | 163.77 | 180.39 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 15.00 | 161.70 | 176.70 | OK | |
| r-release-macos-arm64 | 1.0.1 | 96.00 | OK | |||
| r-release-macos-x86_64 | 1.0.1 | 170.00 | OK | |||
| r-release-windows-x86_64 | 1.0.1 | 19.00 | 158.00 | 177.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 101.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 159.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 24.00 | 201.00 | 225.00 | ERROR |
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘DeSciDe-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_string_network
> ### Title: Plot STRING Network
> ### Aliases: plot_string_network
>
> ### ** Examples
>
> library(STRINGdb)
> string_db <- STRINGdb$new(species = 9606)
WARNING: Score threshold is not specified. We will be using medium stringency cut-off of 400.
WARNING: You didn't specify a version of the STRING database to use. Hence we will use STRING 12.0
> string_ids <- c("9606.ENSP00000269305", "9606.ENSP00000357940")
> plot_string_network(string_db, string_ids, file_directory = tempdir(), export = FALSE)
Error in readPNG(postFormSmart(urlStr, .params = params, .ctype = "raw")) :
libpng error: Not a PNG file
Calls: plot_string_network -> <Anonymous> -> get_png -> readPNG
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘DeSciDe-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: search_pubmed
> ### Title: Search PubMed with Multiple Genes and Terms
> ### Aliases: search_pubmed
>
> ### ** Examples
>
> genes <- c("TP53", "BRCA1")
> terms <- c("cancer", "tumor")
> search_results <- search_pubmed(genes, terms, rank_method = "weighted", verbose = FALSE)
Error: HTTP failure: 500
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN" "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html>
<head>
<title>NCBI/eutils101 - WWW Error 500 Diagnostic</title>
<style type="text/css">
h1.error {color: red; font-size: 40pt}
div.diags {text-indent: 0.5in }
</style>
</head>
<body>
<h1>Server Error</h1>
<p>Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:</p>
<p>
pubmed@nlm.nih.gov - for problems with PubMed<br/>
webadmin@ncbi.nlm.nih.gov - for problems with other services<br/>
</p>
<p>Thank you for your assistance. We will try to fix the
problem as soon as possible.
</p>
<hr/>
<p>
Diagnostic Information:</p>
<div class="diags">Error: 500</div>
<div class="diags">URL: h t t p : / / e x t - h t t p - e u t i l s . l
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in 'DeSciDe-Ex.R' failed
The error most likely occurred in:
> ### Name: plot_string_network
> ### Title: Plot STRING Network
> ### Aliases: plot_string_network
>
> ### ** Examples
>
> library(STRINGdb)
> string_db <- STRINGdb$new(species = 9606)
WARNING: Score threshold is not specified. We will be using medium stringency cut-off of 400.
WARNING: You didn't specify a version of the STRING database to use. Hence we will use STRING 12.0
> string_ids <- c("9606.ENSP00000269305", "9606.ENSP00000357940")
> plot_string_network(string_db, string_ids, file_directory = tempdir(), export = FALSE)
Error in readPNG(postFormSmart(urlStr, .params = params, .ctype = "raw")) :
libpng error: Not a PNG file
Calls: plot_string_network -> <Anonymous> -> get_png -> readPNG
Execution halted
Flavor: r-oldrel-windows-x86_64