Last updated on 2026-08-05 09:50:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 2.50 | 123.58 | 126.08 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 1.91 | 96.28 | 98.19 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 200.07 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 94.26 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 6.00 | 227.00 | 233.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 3.02 | 91.42 | 94.44 | ERROR | |
| r-release-linux-x86_64 | 0.1.3 | 2.37 | 60.29 | 62.66 | ERROR | |
| r-release-macos-arm64 | 0.1.3 | 1.00 | 82.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 2.00 | 223.00 | 225.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 7.00 | 82.00 | 89.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.1.3 | 1.00 | 84.00 | 85.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.3 | 2.00 | 157.00 | 159.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 7.00 | 290.00 | 297.00 | OK |
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
--- finished re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following file failed:
‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
Quitting from bioutils-case-study.Rmd:72-76 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. └─BioUtils::load.geo.soft("", "GDS507", log.transform = TRUE)
2. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
3. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
4. └─GEOquery:::downloadFile(myurl, destfile, mode)
5. ├─base::tryCatch(...)
6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
9. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bioutils-case-study.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following files failed:
‘bioutils-case-study.Rmd’ ‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'bioutils-case-study.Rmd' using rmarkdown
Quitting from bioutils-case-study.Rmd:72-76 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. └─BioUtils::load.geo.soft("", "GDS507", log.transform = TRUE)
2. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
3. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
4. └─GEOquery:::downloadFile(myurl, destfile, mode)
5. ├─base::tryCatch(...)
6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
9. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bioutils-case-study.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building 'bioutils-case-study.Rmd'
--- re-building 'rcc-visual-analytics.Rmd' using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building 'rcc-visual-analytics.Rmd'
SUMMARY: processing the following files failed:
'bioutils-case-study.Rmd' 'rcc-visual-analytics.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64