Last updated on 2026-06-25 18:52:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 2.54 | 123.03 | 125.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 1.97 | 74.79 | 76.76 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 197.75 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 294.91 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 6.00 | 209.00 | 215.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 2.21 | 116.24 | 118.45 | OK | |
| r-release-linux-x86_64 | 0.1.3 | 2.47 | 115.92 | 118.39 | OK | |
| r-release-macos-arm64 | 0.1.3 | 1.00 | 82.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 2.00 | 223.00 | 225.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 6.00 | 211.00 | 217.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | 1.00 | 84.00 | 85.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.3 | 2.00 | 157.00 | 159.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 8.00 | 257.00 | 265.00 | OK |
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
--- finished re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [ftp.ncbi.nlm.nih.gov]:
Connection timed out after 120000 milliseconds
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [ftp.ncbi.nlm.nih.gov]:
Connection timed out after 120000 milliseconds
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following file failed:
‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc