96eca3773367bf8644b4bee58d7e8c14 *DESCRIPTION
55db3b31aab7ca4bfa0254103bcbc36b *LICENSE
e84d911d0249baae8ef5f7d9e328094a *NAMESPACE
5606bcafaefdc18dc89b12a30edeabb6 *R/PCSF.R
053ab4348056f1f22efb9cbfa4708ae6 *R/RcppExports.R
665b35f6d0a27085380c49a1308e29c0 *R/XYomics-package.R
8bdcac4489490c6f2bee65296cae2a00 *R/categorise_sex.R
155cbc1b3afee287521dbf994228b9cc *R/generate_report.R
6900a7a4ee9c4ec98b7f533e43efe1b2 *R/pathway_enrichment.R
fb2e9c5b8252cab152c14d2a7d70ffe9 *R/plotting_and_reporting_functions.R
2a1b2cd329b71d27b36efc9fdefa2fd3 *R/ppi_analysis.R
4911ec1ee24924bb802946638b1715f6 *R/sex_interaction_analysis_bulk.R
e47350051a6293f3b1459b0ebf54555d *R/sex_interaction_analysis_sc.R
df6b54ed6db5a73619cdc71065ac587a *R/sex_stratified_analysis_bulk.R
349d15486854a5238b18f1e7285d1b57 *R/sex_stratified_analysis_sc.R
08aad2a6eee101ddfaaf4a428667b5a6 *build/vignette.rds
b3541136fb511535d905ae351e4112fd *inst/COPYRIGHTS
f0dd37c79c38dc22c613296b1cd40fba *inst/doc/XYomics_bulk_example.R
c9cfc4dd64501b47f479c29919d56bff *inst/doc/XYomics_bulk_example.Rmd
9aa2cfe32bcea11543ab6033b13cb948 *inst/doc/XYomics_bulk_example.html
698db75efe901acfbb524851047a2367 *inst/doc/XYomics_sc_example.R
f3712d223e3de0ce12f0bf6cbd134d86 *inst/doc/XYomics_sc_example.Rmd
c6ba8b81912e00a24bef2246284aa401 *inst/doc/XYomics_sc_example.html
29fa7f110ac434fcee80f55ca6d0b8eb *inst/extdata/Template_report.Rmd
3dc05f8c3ee36d4267d953da3685c29c *inst/extdata/Template_report_bulk.Rmd
86ac89bab51577835559273c5e4c51d8 *inst/extdata/bulk_expression.rds
21df149b8c44ba048c003395e77c078f *inst/extdata/bulk_interaction_results.rds
89c2240dff99cb8a36d28e7ad48073ef *inst/extdata/bulk_network_results.rds
d65bb413e28382e6a6402b85f5f3f0d0 *inst/extdata/bulk_neutral_network.rds
ae55af1eb47cc0a9087276e9e005928f *inst/extdata/bulk_pathway_results.rds
e86716c95625bc9f99b539fd5a122778 *inst/extdata/bulk_phenotype.rds
752b1bfe343a52b10217161bfbc1ad3b *inst/extdata/bulk_results_cat.rds
78378532cd3151816340e810b881b693 *inst/extdata/bulk_results_degs.rds
f75f27013afc24681de9bab1524cff2f *inst/extdata/bulk_sex.rds
48c6fddbce412cdbb0ad32f8e01966d0 *inst/extdata/hormonal_network_metacore.rds
f84fb54de397656dc2246c874f1c7c78 *inst/extdata/sc_interaction_results_small.rds
0806f52b3732e1dd8fa8108d665f229c *inst/extdata/sc_network_results_small.rds
1564ed91efe7a2bf70d72afd9e9f9ffd *inst/extdata/sc_pathway_single_small.rds
49bec91a18e0cb189777a5e933aaca9e *inst/extdata/sc_pathway_single_small_df.rds
d64fba33626d5313e568bfabe4abad24 *inst/extdata/sc_results_degs_small.rds
abaaed70e012fff94eb8c890a0796605 *inst/extdata/sc_results_small.rds
5aab3286c9fa3347fb38811da904def1 *inst/extdata/sc_toy_seurat.rds
dfc093cb984a25570743a93c46ac1615 *inst/extdata/string_example_network.rds
0a6ff01e1299d6e87ec6c3c9952e0094 *man/PCSF.Rd
0487d52178b44d1b0277f5d551769071 *man/XYomics-package.Rd
bebe3800e6786b0a5b12fc8026734642 *man/call_sr.Rd
97f715eec63a2970fbe03fe83feccaef *man/categorize_sex.Rd
91c178ddae39c61b51c4980296ca014c *man/categorized_enrich.Rd
d1d7f498becf00e3d394e68ca56c78bf *man/construct_ppi_pcsf.Rd
0ed1ceca78b26a6c1673ee90c0ff0b70 *man/convert_gene_ids.Rd
1823ba83b48420e9d9fd7eeae18eaa2e *man/generate_cat_report.Rd
b7bb7fd0a7c704df4994923a6e288ca2 *man/generate_dotplot_sc.Rd
9578fd9a05dd7884b16f75f8adc9d2a2 *man/generate_violinplot_bulk.Rd
f793fa39d03f2164437029224fd27fe2 *man/get_string_network.Rd
ba50208ec2146e2dc3afdad4e6dab539 *man/get_top_hubs.Rd
e41fdf972c3a8c58378ec5675952d3e3 *man/plot_enrichment_dotplots.Rd
ad192fd1172f579440f02858f66696bf *man/plot_network.Rd
74db3983e6b87bf7d1a91fb31fdc212b *man/plot_network_pipeline.Rd
b74a0b3a842feec26a7c6633f97141ff *man/plot_volcano_deg.Rd
fb49adc735c34cf6390417496c20440d *man/ppi_pipeline.Rd
ab1ca62e8fcdd1c0bf0263aac976c4b1 *man/sex_interaction_analysis_bulk.Rd
9bd2619312a9f41bcfeafccd5cbc997f *man/sex_interaction_analysis_sc.Rd
d574eee3d3f5613d0e80e6454d1ed335 *man/sex_interaction_pipeline_sc.Rd
389c4eaae46f96aded02d4ea69c49f1a *man/sex_stratified_analysis_bulk.Rd
bea36a09c8bb264082c0493c3bd13411 *man/sex_stratified_analysis_sc.Rd
032e6102b2fa0f57a8e30b9dc3f1185d *man/sex_stratified_pipeline_sc.Rd
ec5c1688a7d3f78a888b0539e7ec8e8a *man/validate_input_bulk.Rd
44002b98b1177b0fc7b07a17055cf892 *man/validate_input_sc.Rd
87c7f2750582701db1d69b9f320e9e3f *src/PCSF.cpp
e6719707e3ab220a9be4c9f07ebdc5d1 *src/RcppExports.cpp
c9cfc4dd64501b47f479c29919d56bff *vignettes/XYomics_bulk_example.Rmd
f3712d223e3de0ce12f0bf6cbd134d86 *vignettes/XYomics_sc_example.Rmd
