# Generated by roxygen2: do not edit by hand

S3method(print,TmCalculator)
export(chem_correct)
export(compare_groups)
export(complement_fast)
export(coor_to_genomic_ranges)
export(fa_to_genomic_ranges)
export(gc)
export(generate_complement)
export(integrate_granges)
export(make_genomiccoord)
export(plot_circos_genome)
export(plot_karyotype_genome)
export(plot_linear_genome)
export(plot_tm_genome_tracks)
export(plot_tm_genome_tracks_interactive)
export(plot_tm_heatmap)
export(plot_tm_heatmap_interactive)
export(plot_tm_karyotype_interactive)
export(plot_tm_linear)
export(salt_correction)
export(tm_calculate)
export(tm_gc)
export(tm_nn)
export(tm_wallace)
export(to_genomic_ranges)
export(to_genomic_ranges_fast)
export(vec_to_genomic_ranges)
importFrom(BSgenome,available.genomes)
importFrom(BSgenome,organism)
importFrom(BSgenome,provider)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,complement)
importFrom(Biostrings,getSeq)
importFrom(Biostrings,letterFrequency)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,subseq)
importFrom(GenomeInfoDb,Seqinfo)
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsInUse)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,distanceToNearest)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,seqinfo)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(GenomicRanges,tile)
importFrom(GenomicRanges,width)
importFrom(Gviz,DataTrack)
importFrom(Gviz,GenomeAxisTrack)
importFrom(Gviz,IdeogramTrack)
importFrom(Gviz,OverlayTrack)
importFrom(Gviz,plotTracks)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(circlize,circos.axis)
importFrom(circlize,circos.clear)
importFrom(circlize,circos.genomicLabels)
importFrom(circlize,circos.genomicLines)
importFrom(circlize,circos.genomicRect)
importFrom(circlize,circos.initializeCircularGenome)
importFrom(circlize,circos.par)
importFrom(circlize,circos.track)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,row_number)
importFrom(dplyr,ungroup)
importFrom(ggbio,layout_karyogram)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_color_viridis_c)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,legend)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(grid,grid.layout)
importFrom(grid,grid.newpage)
importFrom(grid,popViewport)
importFrom(grid,pushViewport)
importFrom(grid,unit)
importFrom(grid,viewport)
importFrom(karyoploteR,kpAddBaseNumbers)
importFrom(karyoploteR,kpAddLabels)
importFrom(karyoploteR,kpAxis)
importFrom(karyoploteR,kpBars)
importFrom(karyoploteR,kpDataBackground)
importFrom(karyoploteR,kpLines)
importFrom(karyoploteR,kpPlotCoverage)
importFrom(karyoploteR,kpPlotMarkers)
importFrom(karyoploteR,kpPlotRegions)
importFrom(karyoploteR,kpPlotRibbon)
importFrom(karyoploteR,kpPoints)
importFrom(karyoploteR,kpRect)
importFrom(karyoploteR,kpText)
importFrom(karyoploteR,plotKaryotype)
importFrom(methods,is)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(rlang,.data)
importFrom(seqinr,read.fasta)
importFrom(stats,kruskal.test)
importFrom(stats,oneway.test)
importFrom(stats,p.adjust)
importFrom(stats,pairwise.t.test)
importFrom(stats,pairwise.wilcox.test)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(viridis,cividis)
importFrom(viridis,inferno)
importFrom(viridis,magma)
importFrom(viridis,plasma)
importFrom(viridis,viridis)
