439f7e306fddce271d497f12f036e763 *DESCRIPTION
3a94c7078e42e1d1824939b7d0f38fee *LICENSE
1ef02f87db13faf7ca8cb2f996438f60 *NAMESPACE
c9e2da4d0a9304423166a99939656618 *R/MALDIassist-package.R
a1676a2459b3f43d013d07d631c9e6ee *R/RcppExports.R
f752c8a277b5d298c9aae3217e9497e2 *R/align_spectra.R
75396f32e5fe1abb6617c5504a86e4b6 *R/auxiliary_cpp.R
9f4795670b5cb3da1ab47cd7c2b9f993 *R/auxiliary_io.R
84d43be0aebf430dc1c8720b97770a5c *R/auxiliary_parallel.R
d204c8eacf2b84ede053d44a89699400 *R/auxiliary_preprocess.R
7b294343dea7a3797ef7f25d27934965 *R/build_kde_spectrum.R
ab71d5ac814d40363470e10a9838cbac *R/build_matched_matrix.R
2de245a42513baf75610d0bfb1cc0910 *R/calculate_peak_prominence.R
2b6d0453db2b41312a6946d8bd386609 *R/estimate_peak_strength.R
ae37ddd65462160c5c043b2b782c47d7 *R/estimate_significance.R
5e46a751d90cb08cf4868addbe19567e *R/filter_overlap_mz.R
cffee6b9fbb611801dd0f0ece75e9a3f *R/filter_peaks.R
67c7e066f0536173519494d21c047c15 *R/find_extrema.R
cf5e2bf72cc0a37f213600abb50584bd *R/find_extrema_fast.R
ecb35b0e9f0b64bfe011bf77c6043aac *R/find_frequent_mz.R
8b1cdeb7c611bb475fa892736ce06d53 *R/find_peaks.R
15e21c4be2abcc4d5a5b5f50f78dd291 *R/find_peaks_fast.R
fb3e1253379f25f938b7c4c4b31f0a0c *R/get_curvature_fun.R
c91aceb4bd7e45154e4ae86bdc56cda8 *R/get_gauss_kde.R
1c8fd9301f7744de361779c109ca9430 *R/heatmap.R
298513a0d5d777e9e4146a74395af375 *R/load_maldi_spectra.R
472c9aaa70ff5c76849c63360ce8a22b *R/match_peaks.R
ddb3e544139fa575c25dfbf25fd6ae56 *R/plot.R
fa26768a91990eb51979c08594f330a1 *R/preprocess_maldi_spectra.R
ec95c43f8f8274c5a155cdfa13e42bf9 *R/smooth_savitzky_golay.R
9365d5f5aca74cb30e8ae26da1bfa05f *R/subtract_baseline.R
c52508bf29521cb319e690373677f5eb *inst/CITATION
38d8da18431561ea5bb3a256cae77d84 *inst/extdata/README
9f94de10189528162d8b835a6e6061b1 *inst/extdata/bruker_sample/1/1SLin/Analysis.FAmethod
19ef376f61e119f344b0fba7b7d7d2b3 *inst/extdata/bruker_sample/1/1SLin/AnalysisParameter.xml
bb29c8f1ff8b193c1ae13fce978fbdeb *inst/extdata/bruker_sample/1/1SLin/acqu
bb29c8f1ff8b193c1ae13fce978fbdeb *inst/extdata/bruker_sample/1/1SLin/acqus
878f27502e98c3e13340420c5f10bc24 *inst/extdata/bruker_sample/1/1SLin/fid
b1c260330025f7b9358497a61a46d4a1 *inst/extdata/bruker_sample/1/1SLin/pdata/1/1r
b7530e013a50323fae609367479bb949 *inst/extdata/bruker_sample/1/1SLin/pdata/1/peaklist.xml
7d6ff227b115fd0e436d42f58fd72156 *inst/extdata/bruker_sample/1/1SLin/pdata/1/proc
7d6ff227b115fd0e436d42f58fd72156 *inst/extdata/bruker_sample/1/1SLin/pdata/1/procs
4392653a13bc19a01a637fc3a6678e18 *inst/extdata/bruker_sample/1/1SLin/sptype
201f7274bf74ee40f95b4eab7f810397 *man/MALDIassist-package.Rd
5358bb382269e6da5f8b8b3dcddb7723 *man/align_spectra.Rd
7278eb9d2b428abe9a96c4bdf00dde68 *man/build_kde_spectrum.Rd
2bad02f2cc35cfa385e0cd65d00b8aa4 *man/build_matched_matrix.Rd
160d4ec856a0dd07e09286c3c202a405 *man/calculate_peak_prominence.Rd
3d60ca71803a655a9483cb6dfa0f592d *man/estimate_peak_strength.Rd
86bbec1e4219bdf870af121cdd426564 *man/estimate_significance.Rd
42a3a6239295e0647e8b16e9f4a0064e *man/figures/README-cohort-heatmap.png
7fae43e30bb4bf92f8a6f312772b3f0b *man/figures/README-example.png
c16cd0c682bb00335d5cc21d073da0c4 *man/filter_overlap_mz.Rd
2b862b7d5329b0e176d37fbeea72ca31 *man/filter_peaks.Rd
54b11887fca3384441367e5e29b67fa5 *man/find_extrema.Rd
c53993c26a1c15e1ace735787ada70e4 *man/find_extrema_fast.Rd
0897384710d115b97465ebbd4f7fee1d *man/find_frequent_mz.Rd
6b373d475f91af4386e6459bcb827e69 *man/find_peaks.Rd
9edf961efd627ea4c710c0998e715e56 *man/find_peaks_fast.Rd
95a2b31019f800304cba725f58fb3a9a *man/get_curvature_fun.Rd
a2133b60a2764e95b703683ced8383f0 *man/get_gauss_kde.Rd
6af0dee9eedf1a2b705fe882cd836216 *man/heatmap_matched_matrix.Rd
09b33892a3fbc720bbb6ce20e421d743 *man/load_maldi_spectra.Rd
45c7290bdded7f52808144ca43ebe70c *man/match_peaks.Rd
5f64c4feae4b7e4812d769e50dca153d *man/preprocess_maldi_spectra.Rd
3011426a1f854809f172bc3f4fc53f39 *man/smooth_savitzky_golay.Rd
6a5f29a8ad07913e72bffa8eb54cb4d6 *man/subtract_baseline.Rd
a167b44c5b7311184cae75c1ce7b714d *man/visualize_spectra.Rd
ddfad10a3d0c447187854e4a6b7775a6 *man/visualize_spectrum.Rd
09730ae0edf8e4b140432bf91f363929 *src/RcppExports.cpp
d3ffac120bc99fb000cb7bba0fa83f8c *src/cpp_baseline_algorithms.cpp
ab95abc6ed8a6944ec1d9462a26a4c98 *src/cpp_calculate_peak_prominence.cpp
ac358f46be44303dbba2b86467326f14 *src/cpp_estimate_peak_strength.cpp
ab0f01ff14cab03c44cd9870df41f25c *src/cpp_find_peaks_fast.cpp
81f9e77bcedbdb638ac249b3958a5988 *src/cpp_savitzkyGolay_filter.cpp
6f45f1e96ffe798daf8802a877b60596 *src/spectrum_math.cpp
d96b41f62a9b8efb0144fc25ae086187 *tests/testthat.R
4d7f4cf8a5e2ac8334820482c021020e *tests/testthat/test-smoke.R
