Package: ssdGSA
Type: Package
Title: Single Sample Directional Gene Set Analysis
Version: 0.1.1
Authors@R: c(person("Xingpeng", "Li", role = c("aut", "cre"), email = "xingpeng.li@pfizer.com"), person("Qi", "Qian", role = "aut"))
Description: A method that inherits the standard gene set variation analysis (GSVA) method and also provides the option to use summary statistics from any analysis (disease vs healthy, lesional side vs nonlesional side, etc..) input to define the direction of gene sets used for directional gene set score calculation for a given disease. Note to use this package, GSVA(>= 1.52.1) is needed to pre-installed. 
    Hanzelmann, S., Castelo, R., and Guinney, J. (2013) <doi:10.1186/1471-2105-14-7>.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, testthat (>= 3.0.0),
Config/testthat/edition: 3
Imports: GSVA, dplyr, purrr, stringr, tibble, vctrs, stats, tidyselect,
        utils, clusterProfiler, org.Hs.eg.db
biocViews:
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
NeedsCompilation: no
Packaged: 2024-07-26 20:30:18 UTC; QIANQ09
Author: Xingpeng Li [aut, cre],
  Qi Qian [aut]
Maintainer: Xingpeng Li <xingpeng.li@pfizer.com>
Repository: CRAN
Date/Publication: 2024-07-26 23:10:02 UTC
Built: R 4.5.2; ; 2025-11-08 04:01:05 UTC; windows
