calc_neiprob            Calculating a set of neighbor QTL effects from
                        conditional genotype probabilities
calc_pve                Calculating phenotypic variation explained by
                        neighbor effects
decompose_genoprobs     Decomposition of conditional genotype
                        probabilities
eff_neighbor            Estimation of self and neighbor QTL effects
                        across a genome
genoprobs2selfprobs     Calculating a set of self QTL effects from
                        conditional genotype probabilities
get_markers             Reshaping marker information
int_neighbor            Testing marker-by-marker epistasis in neighbor
                        QTL effects
logLik_glm.fit          Calculating log-likelihood in generalized
                        linear models
min_dist                Calculating the minimum distance
neiprob                 Calculating neighbor QTL effects
perm_neighbor           Permutation tests for neighbor effects with a
                        QTL model
plot_eff                Plot self and neighbor QTL effects across a
                        genome
plot_nei                Plot LOD score for self or neighbor QTL effects
scan_neighbor           Genome scan for neighbor effects with a QTL
                        model
selfprob                Calculating self QTL effects
sim_nei_qtl             Phenotype simulation for neighbor QTL effects
