annotateAHO	annotateAHO
annotatePeptides	annotatePeptides
Cdsw	Cdsw-class
Cdsw-class	Cdsw-class
computeFDR	computeFDR
computeFDRwithID	computeFDRwithID
createDecoyDB	createDecoyDB
create_fgcz_fasta_db	create_fgcz_fasta_db
fdrSample	fdrSample
greedy	greedy
greedyRes2Matrix	greedyRes2Matrix
hardconstrain	hardconstrain
loadContaminantsFasta2019	loadContaminantsFasta2019
loadContaminantsFasta2021	loadContaminantsFasta2021
makeID	makeID
makeIDUnip	makeIDUnip
masses	masses
objectiveMS1Function	objectiveMS1Function
pepprot	pepprot
plotFDR	plotFDR
predictScoreFDR	predictScoreFDR
prepareMatrix	prepareMatrix
protpepmetashort	protpepmetashort
prozor	prozor
readjustWindows	readjustWindows
readPeptideFasta	readPeptideFasta
removeSignalPeptide	removeSignalPeptide
reverseSeq	reverseSeq
writeFasta	writeFasta
