AA2Binary               Amino Acid To Binary (AA2Binary)
AAKpartComposition      Amino Acid to K Part Composition
                        (AAKpartComposition)
AAindex                 Amino Acid Index (AAindex)
AAutoCor                Amino Acid Autocorrelation-Autocovariance
                        (AAutoCor)
AESNN3                  Learn from alignments (AESNN3)
ANF_DNA                 Accumulated Nucleotide Frequency (ANF_DNA)
ANF_RNA                 Accumulated riboNucleotide Frequency (ANF_RNA)
APAAC                   Amphiphilic Pseudo-Amino Acid
                        Composition(series) (APAAC)
APkNUCTri_DNA           Amphiphilic Pseudo-k Nucleotide
                        Composition-Tri(series) (APkNUCTri_DNA)
APkNUCdi_DNA            Amphiphilic Pseudo-k Nucleotide
                        Composition-di(series) (APkNUCdi_DNA)
APkNUCdi_RNA            Amphiphilic Pseudo-k riboNucleotide
                        Composition-di(series) (APkNUCdi_RNA)
ASA                     Accessible Solvent Accessibility (ASA)
ASDC                    Adaptive skip dipeptide composition (ASDC)
ASDC_DNA                Adaptive skip dinucleotide composition_DNA)
                        (ASDC_DNA)
ASDC_RNA                Adaptive skip di-ribonucleotide composition)
                        (ASDC_RNA)
AutoCorDiNUC_DNA        Di Nucleotide Autocorrelation-Autocovariance
                        (AutoCorDiNUC_DNA)
AutoCorDiNUC_RNA        Di riboNucleotide
                        Autocorrelation-Autocovariance
                        (AutoCorDiNUC_RNA)
AutoCorTriNUC_DNA       Tri Nucleotide Autocorrelation-Autocovariance
                        (AutoCorTriNUC_DNA)
BLOSUM62                Blosum62 (BLOSUM62)
CTD                     Composition_Transition_Distribution (CTD)
CTDC                    CTD Composition (CTDC)
CTDD                    CTD Distribution (CTDD)
CTDT                    CTD Transition (CTDT)
CkSAApair               Composition of k-Spaced Amino Acids pairs
                        (CkSAApair)
CkSGAApair              Composition of k-Spaced Grouped Amino Acids
                        pairs (CkSGAApair)
CkSNUCpair_DNA          Composition of k-Spaced Nucleotides Pairs
                        (CkSNUCpair_DNA)
CkSNUCpair_RNA          Composition of k-Spaced riboNucleotides Pairs
                        (CkSNUCpair_RNA)
CodonFraction           Codon Fraction (CodonFraction)
CodonUsage_DNA          Codon Usage in DNA (CodonUsage_DNA)
CodonUsage_RNA          Codon Usage in RNA (CodonUsage_RNA)
DDE                     Dipeptide Deviation from Expected Mean value
                        (DDE)
DPCP_DNA                Dinucleotide physicochemical properties
                        (DPCP_DNA)
DPCP_RNA                Di-ribonucleotide physicochemical properties
                        (DPCP_RNA)
DiNUC2Binary_DNA        Dinucleotide To Binary DNA (DiNUC2Binary_DNA)
DiNUC2Binary_RNA        Di riboNucleotide To Binary RNA
                        (DiNUC2Binary_RNA)
DiNUCindex_DNA          Di Nucleotide Index (DiNUCindex_DNA)
DiNUCindex_RNA          Di riboNucleotide Index (DiNUCindex_RNA)
DisorderB               disorder Binary (DisorderB)
DisorderC               disorder Content (DisorderC)
DisorderS               disorder Simple (DisorderS)
DistancePair            PseAAC of distance-pairs and reduced alphabet
                        (DistancePair)
EAAComposition          Enhanced Amino Acid Composition
                        (EAAComposition)
EGAAComposition         Enhanced Grouped Amino Acid Composition
                        (EGAAComposition)
EIIP                    Electron-Ion Interaction Pseudopotentials
                        (EIIP)
ENUComposition_DNA      Enhanced Nucleotide Composition
                        (ENUComposition_DNA)
ENUComposition_RNA      Enhanced riboNucleotide Composition
                        (ENUComposition_RNA)
EffectiveNumberCodon    Effective Number of Codon
                        (EffectiveNumberCodon)
ExpectedValKmerNUC_DNA
                        Expected Value for K-mer Nucleotide
                        (ExpectedValKmerNUC_DNA)
ExpectedValKmerNUC_RNA
                        Expected Value for K-mer riboNucleotide
                        (ExpectedValKmerNUC_RNA)
ExpectedValueAA         Expected Value for each Amino Acid
                        (ExpectedValueAA)
ExpectedValueGAA        Expected Value for Grouped Amino Acid
                        (ExpectedValueGAA)
ExpectedValueGKmerAA    Expected Value for Grouped K-mer Amino
                        Acid(ExpectedValueGKmerAA)
ExpectedValueKmerAA     Expected Value for K-mer Amino Acid
                        (ExpectedValueKmerAA)
GAAKpartComposition     Grouped Amino Acid K Part Composition
                        (GAAKpartComposition)
G_Ccontent_DNA          G_C content in DNA (G_Ccontent_DNA)
G_Ccontent_RNA          G_C content in RNA (G_Ccontent_RNA)
GrpDDE                  Group Dipeptide Deviation from Expected Mean
                        (GrpDDE)
KNNPeptide              K-Nearest Neighbor for Peptides (KNNPeptide)
KNNProtein              K-Nearest Neighbor for Protein (KNNProtein)
KNN_DNA                 K-Nearest Neighbor_DNA (KNN_DNA)
KNN_RNA                 K-Nearest Neighbor_RNA (KNN_RNA)
LocalPoSpKAAF           Local Position Specific k Amino Acids Frequency
                        (LocalPoSpKAAF)
LocalPoSpKNUCF_DNA      Local Position Specific k Nucleotide Frequency
                        (LocalPoSpKNUCF_DNA)
LocalPoSpKNUCF_RNA      Local Position Specific k riboNucleotide
                        Frequency (LocalPoSpKNUCF_RNA)
MMI_DNA                 Multivariate Mutual Information_DNA (MMI_DNA)
MMI_RNA                 Multivariate Mutual Information_RNA (MMI_RNA)
Mismatch_DNA            Mismatch_DNA (Mismatch_DNA)
Mismatch_RNA            Mismatch_RNA (Mismatch_RNA)
NCP_DNA                 Nucleotide Chemical Property (NCP_DNA)
NCP_RNA                 riboNucleotide Chemical Property (NCP_RNA)
NUC2Binary_DNA          Nucleotide To Binary (NUC2Binary_DNA)
NUC2Binary_RNA          riboNucleotide To Binary (NUC2Binary_RNA)
NUCKpartComposition_DNA
                        Nucleotide to K Part Composition
                        (NUCKpartComposition_DNA)
NUCKpartComposition_RNA
                        riboNucleotide to K Part Composition
                        (NUCKpartComposition_RNA)
OPF_10bit               Overlapping Property Features_10bit (OPF_10bit)
OPF_7bit_T1             Overlapping property features_7bit_T1
                        (OPF_7bit_T1)
OPF_7bit_T2             Overlapping property features_7bit_T2
                        (OPF_7bit_T2)
OPF_7bit_T3             Overlapping property features_7bit_T3
                        (OPF_7bit_T3)
PCPseDNC                Parallel Correlation Pseudo Dinucleotide
                        Composition (PCPseDNC)
PS2_DNA                 Position-specific of two nucleotide_DNA
                        (PS2_DNA)
PS2_RNA                 Position-specific of two nucleotide_RNA
                        (PS2_RNA)
PS3_DNA                 Position-specific of three nucleotide_DNA
                        (PS3_DNA)
PS3_RNA                 Position-specific of three ribonucleotide_RNA
                        (PS3_RNA)
PS4_DNA                 Position-specific of four nucleotide_DNA
                        (PS4_DNA)
PS4_RNA                 Position-specific of four ribonucleotide
                        (PS4_RNA)
PSEAAC                  Pseudo-Amino Acid Composition (Parallel)
                        (PSEAAC)
PSEkNUCTri_DNA          Pseudo k Nucleotide Composition-Tri(Parallel)
                        (PSEkNUCTri_RNA)
PSEkNUCdi_DNA           Pseudo k Nucleotide Composition-Di(Parallel)
                        (PSEkNUCdi_DNA)
PSEkNUCdi_RNA           Pseudo k riboNucleotide
                        Composition-Di(Parallel) (PSEkNUCdi_RNA)
PSSM                    Position-Specific Scoring Matrix (PSSM)
PSTNPds                 Position-Specific Trinucleotide Propensity
                        based on double-strand (PSTNPds)
PSTNPss_DNA             Position-Specific Trinucleotide Propensity
                        based on single-strand DNA (PSTNPss_DNA)
PSTNPss_RNA             Position-Specific Tri-ribonucleotide Propensity
                        based on single-strand RNA (PSTNPss_RNA)
PseEIIP                 Pseudo Electron-Ion Interaction
                        Pseudopotentials of Trinucleotide (PseEIIP)
PseKRAAC_T1             Pseudo K_tuple Reduced Amino Acid Composition
                        Type-1 (PseKRAAC_T1)
PseKRAAC_T10            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-10 (PseKRAAC_T10)
PseKRAAC_T11            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-11 (PseKRAAC_T11)
PseKRAAC_T12            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-12 (PseKRAAC_T12)
PseKRAAC_T13            Pseudo K_tuple Reduced Amino Acid Composition
                        Type_13 (PseKRAAC_T13)
PseKRAAC_T14            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-14 (PseKRAAC_T14)
PseKRAAC_T15            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-15 (PseKRAAC_T15)
PseKRAAC_T16            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-16 (PseKRAAC_T16)
PseKRAAC_T2             Pseudo K_tuple Reduced Amino Acid Composition
                        Type-2 (PseKRAAC_T2)
PseKRAAC_T3A            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-3A (PseKRAAC_T3A)
PseKRAAC_T3B            Pseudo K_tuple Reduced Amino Acid Composition
                        Type_3B (PseKRAAC_T3B)
PseKRAAC_T4             Pseudo K_tuple Reduced Amino Acid Composition
                        Type-4 (PseKRAAC_T4)
PseKRAAC_T5             Pseudo K_tuple Reduced Amino Acid Composition
                        Type-5 (PseKRAAC_T5)
PseKRAAC_T6A            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-6A (PseKRAAC_T6A)
PseKRAAC_T6B            Pseudo K_tuple Reduced Amino Acid Composition
                        Type-6B (PseKRAAC_T6B)
PseKRAAC_T7             Pseudo K_tuple Reduced Amino Acid Composition
                        Type-7 (PseKRAAC_T7)
PseKRAAC_T8             Pseudo K_tuple Reduced Amino Acid Composition
                        Type-8 (PseKRAAC_T8)
PseKRAAC_T9             Pseudo K_tuple Reduced Amino Acid Composition
                        Type-9 (PseKRAAC_T9)
QSOrder                 Quasi Sequence Order (QSOrder)
SAAC                    Splitted Amino Acid Composition (SAAC)
SGAAC                   Splitted Group Amino Acid Composition (SGAAC)
SOCNumber               Sequence Order Coupling Number (SOCNumber)
SSEB                    Secondary Structure Elements Binary (SSEB)
SSEC                    Secondary Structure Elements Composition (SSEC)
SSES                    Secondary Structure Elements Simple (SSES)
TPCP_DNA                Trinucleotide physicochemical properties
                        (TPCP_DNA)
TorsionAngle            Torsion Angle (TorsionAngle)
TriNUCindex_DNA         Tri Nucleotide Index (TriNucIndex)
Zcurve12bit_DNA         Z_curve_12bit_DNA (Zcurve12bit_DNA)
Zcurve12bit_RNA         Z_curve_12bit_RNA (Zcurve12bit_RNA)
Zcurve144bit_DNA        Z_curve_144bit_DNA (Zcurve144bit_DNA)
Zcurve144bit_RNA        Z_curve_144bit_RNA (Zcurve144bit_RNA)
Zcurve36bit_DNA         Z_curve_36bit_DNA (Zcurve36bit_DNA)
Zcurve36bit_RNA         Z_curve_36bit_RNA (Zcurve36bit_RNA)
Zcurve48bit_DNA         Z_curve_48bit_DNA (Zcurve48bit_DNA)
Zcurve48bit_RNA         Z_curve_48bit_RNA (Zcurve48bit_RNA)
Zcurve9bit_DNA          Z_curve_9bit_DNA (Zcurve9bit_DNA)
Zcurve9bit_RNA          Z_curve_9bit_RNA (Zcurve9bit_RNA)
alphabetCheck           AlphabetCheck
binary_3bit_T1          Binary - 3bit - Type1 (binary_3bit_T1)
binary_3bit_T2          Binary - 3bit - Type2 (binary_3bit_T2)
binary_3bit_T3          Binary - 3bit - Type3 (binary_3bit_T3)
binary_3bit_T4          Binary - 3bit - Type4 (binary_3bit_T4)
binary_3bit_T5          Binary - 3bit - Type5 (binary_3bit_T5)
binary_3bit_T6          Binary - 3bit - Type6 (binary_3bit_T6)
binary_3bit_T7          Binary - 3bit - Type7 (binary_3bit_T7)
binary_5bit_T1          Binary - 5bit - Type1 (binary_5bit_T1)
binary_5bit_T2          Binary - 5bit - Type2 (binary_5bit_T2)
binary_6bit             Binary - 6bit (binary_6bit)
codonAdaptionIndex      Codon Adaption Index (codonAdaptionIndex)
conjointTriad           Conjoint Triad (conjointTriad)
conjointTriadKS         k-Spaced Conjoint Triad (conjointTriadKS)
fa.read                 Fasta File Reader (fa.read)
fickettScore            Fickett Score (fickettScore)
kAAComposition          k Amino Acid Composition (kAAComposition)
kGAAComposition         k Grouped Amino Acid Composition
                        (kGAAComposition)
kNUComposition_DNA      k Nucleotide Composition (kNUComposition_DNA)
kNUComposition_RNA      k riboNucleotide Composition
                        (kNUComposition_RNA)
maxORF                  Maximum Open Reading Frame in DNA (maxORF)
maxORF_RNA              Maximum Open Reading Frame in RNA (maxORF_RNA)
maxORFlength_DNA        Maximum Open Reading Frame length in DNA
                        (maxORFlength_DNA)
maxORFlength_RNA        Maximum Open Reading Frame length in RNA
                        (maxORFlength_RNA)
nameKmer                naming Kmer (nameKmer)
needleman               Needleman-Wunsch (needleman)
nonStandardSeq          nonStandard sequence (nonStandardSeq)
readASAdir              Read Directory of Accessible Solvent
                        accessibility predicted files (readASAdir)
readDisDir              Read disorder predicted Directory (readDisDir)
readPSSMdir             Read PSSM Directory (readPSSMdir)
readTorsionDir          Read Directory of Torsion predicted files
                        (readTorsionDir)
readss2Dir              Read ss2 predicted Directory (readss2Dir)
revComp                 reverseCompelement (revComp)
zSCALE                  Z-SCALE (zSCALE)
