Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4777)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44347)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-870	-2.004e+03	0.0000	943.0	19.74%	447.9	1.01%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-763	-1.759e+03	0.0000	1107.0	23.18%	942.1	2.13%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-59	-1.368e+02	0.0000	1237.0	25.90%	7328.6	16.56%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-59	-1.367e+02	0.0000	434.0	9.09%	1681.0	3.80%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-54	-1.251e+02	0.0000	491.0	10.28%	2111.4	4.77%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-53	-1.242e+02	0.0000	539.0	11.29%	2426.4	5.48%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-53	-1.240e+02	0.0000	739.0	15.47%	3784.6	8.55%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-53	-1.233e+02	0.0000	395.0	8.27%	1534.7	3.47%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-51	-1.196e+02	0.0000	424.0	8.88%	1734.1	3.92%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-50	-1.160e+02	0.0000	468.0	9.80%	2035.5	4.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-50	-1.156e+02	0.0000	816.0	17.09%	4428.7	10.00%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-50	-1.152e+02	0.0000	868.0	18.17%	4814.4	10.88%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-49	-1.140e+02	0.0000	1046.0	21.90%	6169.8	13.94%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-48	-1.111e+02	0.0000	2969.0	62.16%	22848.4	51.62%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-48	-1.106e+02	0.0000	781.0	16.35%	4233.2	9.56%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-45	-1.054e+02	0.0000	292.0	6.11%	1045.5	2.36%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-45	-1.041e+02	0.0000	910.0	19.05%	5270.4	11.91%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-44	-1.029e+02	0.0000	744.0	15.58%	4056.3	9.16%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-43	-9.977e+01	0.0000	675.0	14.13%	3595.4	8.12%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-41	-9.476e+01	0.0000	230.0	4.82%	760.3	1.72%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-38	-8.797e+01	0.0000	687.0	14.38%	3824.6	8.64%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-35	-8.251e+01	0.0000	850.0	17.80%	5123.1	11.57%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-34	-7.913e+01	0.0000	528.0	11.06%	2786.9	6.30%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-33	-7.802e+01	0.0000	531.0	11.12%	2820.5	6.37%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-32	-7.566e+01	0.0000	1309.0	27.41%	8917.0	20.14%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-31	-7.202e+01	0.0000	400.0	8.38%	1975.2	4.46%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-31	-7.176e+01	0.0000	1898.0	39.74%	14033.6	31.70%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-30	-7.116e+01	0.0000	190.0	3.98%	666.3	1.51%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-30	-6.928e+01	0.0000	451.0	9.44%	2356.6	5.32%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-27	-6.418e+01	0.0000	923.0	19.33%	6003.2	13.56%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-25	-5.798e+01	0.0000	499.0	10.45%	2841.6	6.42%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-23	-5.486e+01	0.0000	686.0	14.36%	4305.3	9.73%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-23	-5.438e+01	0.0000	1257.0	26.32%	8956.3	20.23%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-22	-5.275e+01	0.0000	245.0	5.13%	1128.5	2.55%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-21	-5.065e+01	0.0000	393.0	8.23%	2168.8	4.90%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-21	-5.040e+01	0.0000	1353.0	28.33%	9870.7	22.30%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-20	-4.761e+01	0.0000	551.0	11.54%	3388.0	7.65%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-20	-4.611e+01	0.0000	865.0	18.11%	5903.9	13.34%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-20	-4.607e+01	0.0000	632.0	13.23%	4042.6	9.13%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-18	-4.282e+01	0.0000	404.0	8.46%	2356.7	5.32%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-18	-4.210e+01	0.0000	431.0	9.02%	2568.1	5.80%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-18	-4.188e+01	0.0000	70.0	1.47%	181.1	0.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-17	-4.022e+01	0.0000	349.0	7.31%	1989.8	4.50%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-17	-3.996e+01	0.0000	1067.0	22.34%	7727.4	17.46%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-17	-3.970e+01	0.0000	1037.0	21.71%	7482.0	16.90%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-17	-3.951e+01	0.0000	1254.0	26.26%	9327.6	21.07%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-16	-3.881e+01	0.0000	1066.0	22.32%	7750.4	17.51%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-16	-3.856e+01	0.0000	60.0	1.26%	147.9	0.33%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-16	-3.827e+01	0.0000	62.0	1.30%	157.6	0.36%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-15	-3.673e+01	0.0000	1601.0	33.52%	12429.0	28.08%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-14	-3.346e+01	0.0000	620.0	12.98%	4204.7	9.50%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-14	-3.340e+01	0.0000	178.0	3.73%	869.8	1.97%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-14	-3.295e+01	0.0000	351.0	7.35%	2113.3	4.77%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-14	-3.239e+01	0.0000	369.0	7.73%	2258.1	5.10%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-14	-3.224e+01	0.0000	47.0	0.98%	110.5	0.25%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-13	-3.215e+01	0.0000	1081.0	22.63%	8071.2	18.23%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-13	-3.166e+01	0.0000	429.0	8.98%	2731.9	6.17%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-13	-3.105e+01	0.0000	366.0	7.66%	2258.4	5.10%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-13	-3.069e+01	0.0000	422.0	8.84%	2695.5	6.09%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-13	-3.062e+01	0.0000	939.0	19.66%	6913.6	15.62%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-12	-2.967e+01	0.0000	207.0	4.33%	1109.4	2.51%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-12	-2.913e+01	0.0000	498.0	10.43%	3324.2	7.51%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-12	-2.902e+01	0.0000	1198.0	25.08%	9178.5	20.74%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-12	-2.815e+01	0.0000	612.0	12.81%	4265.8	9.64%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-10	-2.508e+01	0.0000	753.0	15.77%	5515.6	12.46%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-10	-2.497e+01	0.0000	867.0	18.15%	6479.9	14.64%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-10	-2.478e+01	0.0000	490.0	10.26%	3359.4	7.59%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-10	-2.398e+01	0.0000	1571.0	32.89%	12647.8	28.57%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-10	-2.359e+01	0.0000	838.0	17.55%	6278.1	14.18%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-10	-2.351e+01	0.0000	321.0	6.72%	2050.5	4.63%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-9	-2.276e+01	0.0000	715.0	14.97%	5267.7	11.90%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-9	-2.231e+01	0.0000	90.0	1.88%	398.0	0.90%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-9	-2.223e+01	0.0000	990.0	20.73%	7625.2	17.23%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-9	-2.221e+01	0.0000	183.0	3.83%	1035.0	2.34%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-9	-2.184e+01	0.0000	660.0	13.82%	4835.1	10.92%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-9	-2.146e+01	0.0000	620.0	12.98%	4513.4	10.20%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-9	-2.145e+01	0.0000	325.0	6.80%	2122.3	4.79%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-9	-2.126e+01	0.0000	309.0	6.47%	2001.3	4.52%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-9	-2.101e+01	0.0000	166.0	3.48%	929.8	2.10%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-9	-2.092e+01	0.0000	946.0	19.81%	7295.2	16.48%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-8	-2.070e+01	0.0000	337.0	7.06%	2232.1	5.04%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-8	-2.053e+01	0.0000	2025.0	42.40%	16895.2	38.17%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-8	-2.042e+01	0.0000	426.0	8.92%	2949.9	6.66%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-8	-2.027e+01	0.0000	498.0	10.43%	3539.9	8.00%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-8	-1.974e+01	0.0000	810.0	16.96%	6172.4	13.94%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-8	-1.965e+01	0.0000	31.0	0.65%	80.5	0.18%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-8	-1.951e+01	0.0000	374.0	7.83%	2553.2	5.77%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-1.937e+01	0.0000	818.0	17.13%	6254.1	14.13%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-8	-1.896e+01	0.0000	122.0	2.55%	644.0	1.45%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-8	-1.875e+01	0.0000	206.0	4.31%	1258.3	2.84%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-8	-1.866e+01	0.0000	408.0	8.54%	2848.8	6.44%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-8	-1.854e+01	0.0000	698.0	14.61%	5262.8	11.89%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-7	-1.839e+01	0.0000	415.0	8.69%	2912.1	6.58%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-7	-1.827e+01	0.0000	202.0	4.23%	1236.9	2.79%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-7	-1.808e+01	0.0000	66.0	1.38%	282.4	0.64%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-7	-1.797e+01	0.0000	651.0	13.63%	4884.7	11.04%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-7	-1.786e+01	0.0000	624.0	13.07%	4660.3	10.53%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-7	-1.775e+01	0.0000	988.0	20.69%	7784.7	17.59%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-7	-1.741e+01	0.0000	407.0	8.52%	2873.3	6.49%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-7	-1.729e+01	0.0000	339.0	7.10%	2326.7	5.26%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-7	-1.723e+01	0.0000	612.0	12.81%	4580.2	10.35%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-7	-1.714e+01	0.0000	472.0	9.88%	3414.2	7.71%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-7	-1.696e+01	0.0000	155.0	3.25%	907.8	2.05%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-7	-1.669e+01	0.0000	570.0	11.93%	4245.7	9.59%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-7	-1.664e+01	0.0000	247.0	5.17%	1612.2	3.64%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-7	-1.653e+01	0.0000	418.0	8.75%	2987.9	6.75%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-7	-1.643e+01	0.0000	152.0	3.18%	893.0	2.02%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-7	-1.641e+01	0.0000	1013.0	21.21%	8060.0	18.21%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-7	-1.631e+01	0.0000	425.0	8.90%	3051.2	6.89%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-6	-1.610e+01	0.0000	982.0	20.56%	7803.2	17.63%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-6	-1.608e+01	0.0000	277.0	5.80%	1860.8	4.20%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-6	-1.606e+01	0.0000	415.0	8.69%	2976.4	6.72%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-6	-1.605e+01	0.0000	351.0	7.35%	2454.1	5.54%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-6	-1.596e+01	0.0000	85.0	1.78%	424.0	0.96%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-6	-1.572e+01	0.0000	167.0	3.50%	1016.6	2.30%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-6	-1.526e+01	0.0000	1319.0	27.62%	10815.9	24.43%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-6	-1.505e+01	0.0000	109.0	2.28%	602.0	1.36%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-6	-1.492e+01	0.0000	297.0	6.22%	2047.6	4.63%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.474e+01	0.0000	444.0	9.30%	3255.0	7.35%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-6	-1.458e+01	0.0000	437.0	9.15%	3202.3	7.23%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-6	-1.451e+01	0.0000	963.0	20.16%	7710.1	17.42%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-6	-1.431e+01	0.0000	48.0	1.01%	200.1	0.45%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-6	-1.422e+01	0.0000	300.0	6.28%	2090.0	4.72%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-6	-1.412e+01	0.0000	58.0	1.21%	264.4	0.60%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-6	-1.407e+01	0.0000	250.0	5.23%	1692.1	3.82%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-6	-1.400e+01	0.0000	139.0	2.91%	835.9	1.89%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-6	-1.393e+01	0.0000	190.0	3.98%	1224.2	2.77%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-6	-1.389e+01	0.0000	471.0	9.86%	3508.2	7.93%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-5	-1.347e+01	0.0000	628.0	13.15%	4854.4	10.97%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.346e+01	0.0000	717.0	15.01%	5619.1	12.69%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.336e+01	0.0000	704.0	14.74%	5511.1	12.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-5	-1.294e+01	0.0000	182.0	3.81%	1182.8	2.67%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-5	-1.289e+01	0.0000	56.0	1.17%	262.8	0.59%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-5	-1.281e+01	0.0000	413.0	8.65%	3059.2	6.91%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-5	-1.279e+01	0.0000	83.0	1.74%	446.0	1.01%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-5	-1.274e+01	0.0000	340.0	7.12%	2456.1	5.55%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-5	-1.262e+01	0.0000	502.0	10.51%	3814.4	8.62%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-5	-1.250e+01	0.0000	355.0	7.43%	2587.1	5.84%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-5	-1.223e+01	0.0000	576.0	12.06%	4459.8	10.08%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-5	-1.211e+01	0.0000	323.0	6.76%	2335.9	5.28%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-5	-1.201e+01	0.0000	241.0	5.05%	1670.2	3.77%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-5	-1.200e+01	0.0000	404.0	8.46%	3011.8	6.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.191e+01	0.0000	89.0	1.86%	500.6	1.13%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-5	-1.186e+01	0.0000	520.0	10.89%	3996.1	9.03%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-5	-1.179e+01	0.0000	602.0	12.60%	4700.9	10.62%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-5	-1.169e+01	0.0000	410.0	8.58%	3072.5	6.94%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-4	-1.119e+01	0.0000	63.0	1.32%	326.5	0.74%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-4	-1.114e+01	0.0000	278.0	5.82%	1994.4	4.51%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-4	-1.099e+01	0.0000	72.0	1.51%	391.4	0.88%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-4	-1.053e+01	0.0001	520.0	10.89%	4050.6	9.15%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-4	-1.042e+01	0.0001	1083.0	22.68%	8985.9	20.30%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-4	-1.038e+01	0.0001	129.0	2.70%	823.0	1.86%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-4	-1.022e+01	0.0001	981.0	20.54%	8092.0	18.28%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-4	-1.003e+01	0.0001	232.0	4.86%	1650.7	3.73%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-4	-9.989e+00	0.0001	244.0	5.11%	1749.4	3.95%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-4	-9.579e+00	0.0002	228.0	4.77%	1630.9	3.68%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-4	-9.467e+00	0.0002	1901.0	39.80%	16438.5	37.14%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-4	-9.398e+00	0.0002	1578.0	33.04%	13502.5	30.50%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-3	-8.876e+00	0.0004	61.0	1.28%	340.4	0.77%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-3	-8.705e+00	0.0004	229.0	4.79%	1664.8	3.76%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-3	-8.505e+00	0.0005	1407.0	29.46%	12020.2	27.16%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-3	-8.480e+00	0.0005	876.0	18.34%	7265.0	16.41%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-3	-8.383e+00	0.0006	449.0	9.40%	3534.7	7.99%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-8.382e+00	0.0006	247.0	5.17%	1823.7	4.12%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-3	-8.326e+00	0.0006	105.0	2.20%	679.0	1.53%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-3	-8.203e+00	0.0007	995.0	20.83%	8341.0	18.84%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.884e+00	0.0010	1574.0	32.96%	13582.7	30.69%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-7.818e+00	0.0010	229.0	4.79%	1692.6	3.82%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-3	-7.790e+00	0.0010	363.0	7.60%	2823.2	6.38%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-7.417e+00	0.0015	78.0	1.63%	488.7	1.10%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-7.269e+00	0.0017	970.0	20.31%	8182.2	18.48%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-7.261e+00	0.0017	502.0	10.51%	4047.5	9.14%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-7.110e+00	0.0020	802.0	16.79%	6696.5	15.13%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-7.032e+00	0.0022	200.0	4.19%	1477.7	3.34%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-6.996e+00	0.0022	348.0	7.29%	2729.3	6.17%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-3	-6.989e+00	0.0022	2219.0	46.46%	19569.4	44.21%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-6.948e+00	0.0023	219.0	4.59%	1638.5	3.70%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-6.672e+00	0.0030	33.0	0.69%	170.5	0.39%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-2	-6.672e+00	0.0030	134.0	2.81%	946.3	2.14%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-2	-6.571e+00	0.0033	351.0	7.35%	2774.1	6.27%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-2	-6.570e+00	0.0033	1039.0	21.75%	8852.4	20.00%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-2	-6.561e+00	0.0033	148.0	3.10%	1063.5	2.40%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-6.543e+00	0.0034	325.0	6.80%	2552.7	5.77%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-6.478e+00	0.0036	225.0	4.71%	1705.5	3.85%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-6.446e+00	0.0037	98.0	2.05%	663.9	1.50%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-6.399e+00	0.0038	777.0	16.27%	6522.6	14.74%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.346e+00	0.0040	111.0	2.32%	769.3	1.74%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-2	-6.272e+00	0.0043	98.0	2.05%	667.1	1.51%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-2	-6.250e+00	0.0044	1872.0	39.20%	16448.8	37.16%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-2	-6.247e+00	0.0044	512.0	10.72%	4190.9	9.47%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-6.135e+00	0.0049	2091.0	43.78%	18472.5	41.73%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-6.092e+00	0.0050	80.0	1.68%	529.1	1.20%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-2	-6.047e+00	0.0052	252.0	5.28%	1950.7	4.41%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-2	-6.021e+00	0.0054	284.0	5.95%	2224.5	5.03%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.873e+00	0.0062	402.0	8.42%	3251.0	7.34%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-5.856e+00	0.0063	74.0	1.55%	487.8	1.10%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-5.802e+00	0.0066	191.0	4.00%	1444.7	3.26%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-2	-5.677e+00	0.0074	326.0	6.83%	2601.5	5.88%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.645e+00	0.0076	110.0	2.30%	779.2	1.76%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-2	-5.615e+00	0.0078	381.0	7.98%	3081.6	6.96%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-5.613e+00	0.0078	658.0	13.78%	5519.4	12.47%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-2	-5.508e+00	0.0086	8.0	0.17%	23.8	0.05%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-5.400e+00	0.0095	221.0	4.63%	1713.5	3.87%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-5.368e+00	0.0098	397.0	8.31%	3234.2	7.31%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.193e+00	0.0116	78.0	1.63%	533.2	1.20%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.095e+00	0.0127	118.0	2.47%	860.9	1.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.068e+00	0.0130	620.0	12.98%	5220.7	11.79%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-4.981e+00	0.0141	37.0	0.77%	220.3	0.50%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-4.912e+00	0.0151	107.0	2.24%	775.8	1.75%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-2	-4.908e+00	0.0151	467.0	9.78%	3876.1	8.76%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-4.837e+00	0.0161	600.0	12.56%	5059.6	11.43%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-4.814e+00	0.0164	73.0	1.53%	502.8	1.14%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-2	-4.694e+00	0.0184	263.0	5.51%	2105.2	4.76%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-4.668e+00	0.0188	110.0	2.30%	807.9	1.83%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-1	-4.581e+00	0.0204	424.0	8.88%	3518.7	7.95%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-4.565e+00	0.0206	85.0	1.78%	605.1	1.37%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-1	-4.561e+00	0.0206	217.0	4.54%	1716.0	3.88%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-4.511e+00	0.0216	12.0	0.25%	51.4	0.12%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-4.349e+00	0.0253	119.0	2.49%	892.5	2.02%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-4.267e+00	0.0273	300.0	6.28%	2449.2	5.53%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-4.266e+00	0.0273	754.0	15.79%	6482.5	14.64%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.253e+00	0.0274	835.0	17.48%	7212.6	16.29%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-4.220e+00	0.0282	103.0	2.16%	763.6	1.73%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-4.186e+00	0.0291	109.0	2.28%	814.9	1.84%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-4.182e+00	0.0291	233.0	4.88%	1871.1	4.23%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.178e+00	0.0291	122.0	2.55%	923.6	2.09%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-3.982e+00	0.0352	974.0	20.39%	8494.1	19.19%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-3.976e+00	0.0352	1056.0	22.11%	9238.5	20.87%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.868e+00	0.0390	32.0	0.67%	200.5	0.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.825e+00	0.0406	282.0	5.90%	2317.5	5.24%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.762e+00	0.0430	45.0	0.94%	303.4	0.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.762e+00	0.0430	216.0	4.52%	1745.4	3.94%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-1	-3.760e+00	0.0430	544.0	11.39%	4643.1	10.49%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-3.712e+00	0.0447	46.0	0.96%	312.4	0.71%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-3.537e+00	0.0530	150.0	3.14%	1186.9	2.68%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.527e+00	0.0533	24.0	0.50%	145.9	0.33%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.418e+00	0.0592	37.0	0.77%	247.3	0.56%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-3.364e+00	0.0622	21.0	0.44%	125.8	0.28%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-3.321e+00	0.0647	16.0	0.34%	89.9	0.20%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-3.318e+00	0.0647	272.0	5.70%	2260.9	5.11%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.282e+00	0.0667	541.0	11.33%	4657.7	10.52%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-3.265e+00	0.0675	40.0	0.84%	274.8	0.62%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-3.225e+00	0.0700	159.0	3.33%	1279.0	2.89%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.167e+00	0.0739	30.0	0.63%	197.7	0.45%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-1	-3.151e+00	0.0748	62.0	1.30%	456.7	1.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.123e+00	0.0766	66.0	1.38%	490.7	1.11%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-3.077e+00	0.0798	674.0	14.11%	5874.9	13.27%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.057e+00	0.0812	417.0	8.73%	3566.1	8.06%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.055e+00	0.0812	184.0	3.85%	1504.0	3.40%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.995e+00	0.0856	34.0	0.71%	232.5	0.53%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.970e+00	0.0874	77.0	1.61%	587.5	1.33%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.957e+00	0.0882	56.0	1.17%	412.1	0.93%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.944e+00	0.0891	86.0	1.80%	664.9	1.50%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.795e+00	0.1029	166.0	3.48%	1361.8	3.08%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.710e+00	0.1117	88.0	1.84%	690.6	1.56%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-2.621e+00	0.1216	87.0	1.82%	685.6	1.55%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-2.606e+00	0.1229	311.0	6.51%	2656.5	6.00%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.563e+00	0.1279	181.0	3.79%	1506.5	3.40%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.546e+00	0.1295	92.0	1.93%	731.5	1.65%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-2.434e+00	0.1444	66.0	1.38%	513.8	1.16%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.417e+00	0.1463	160.0	3.35%	1330.8	3.01%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.379e+00	0.1514	303.0	6.34%	2603.3	5.88%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-2.365e+00	0.1529	238.0	4.98%	2024.5	4.57%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-2.337e+00	0.1567	25.0	0.52%	174.5	0.39%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.311e+00	0.1602	137.0	2.87%	1134.5	2.56%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.296e+00	0.1620	180.0	3.77%	1514.9	3.42%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-2.284e+00	0.1633	21.0	0.44%	143.3	0.32%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.256e+00	0.1674	70.0	1.47%	554.6	1.25%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.219e+00	0.1729	326.0	6.83%	2823.5	6.38%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.212e+00	0.1735	102.0	2.14%	833.6	1.88%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.201e+00	0.1748	61.0	1.28%	479.8	1.08%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.183e+00	0.1774	223.0	4.67%	1905.0	4.30%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.140e+00	0.1845	3.0	0.06%	11.1	0.03%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.131e+00	0.1855	37.0	0.77%	278.2	0.63%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.041e+00	0.2022	125.0	2.62%	1044.4	2.36%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.021e+00	0.2055	82.0	1.72%	668.2	1.51%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.983e+00	0.2128	165.0	3.45%	1402.7	3.17%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.910e+00	0.2281	579.0	12.12%	5147.0	11.63%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.868e+00	0.2369	504.0	10.55%	4470.7	10.10%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.867e+00	0.2369	98.0	2.05%	816.4	1.84%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.848e+00	0.2400	509.0	10.66%	4518.8	10.21%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.822e+00	0.2454	21.0	0.44%	153.4	0.35%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.813e+00	0.2468	184.0	3.85%	1584.9	3.58%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.770e+00	0.2567	5.0	0.10%	27.7	0.06%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.763e+00	0.2576	36.0	0.75%	281.1	0.64%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.719e+00	0.2683	108.0	2.26%	913.7	2.06%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.686e+00	0.2762	20.0	0.42%	148.4	0.34%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.662e+00	0.2819	1226.0	25.67%	11114.1	25.11%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.658e+00	0.2822	635.0	13.30%	5693.8	12.86%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.635e+00	0.2876	323.0	6.76%	2854.1	6.45%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.547e+00	0.3130	324.0	6.78%	2873.2	6.49%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.546e+00	0.3130	23.0	0.48%	177.2	0.40%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.534e+00	0.3150	11.0	0.23%	77.8	0.18%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.471e+00	0.3345	110.0	2.30%	947.6	2.14%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.461e+00	0.3367	47.0	0.98%	388.7	0.88%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.446e+00	0.3406	104.0	2.18%	895.3	2.02%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.368e+00	0.3670	610.0	12.77%	5510.8	12.45%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.366e+00	0.3670	157.0	3.29%	1378.1	3.11%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.333e+00	0.3775	126.0	2.64%	1101.3	2.49%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.308e+00	0.3858	997.0	20.88%	9078.5	20.51%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.304e+00	0.3859	295.0	6.18%	2638.2	5.96%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.179e+00	0.4360	3.0	0.06%	18.0	0.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.156e+00	0.4447	628.0	13.15%	5713.9	12.91%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.118e+00	0.4602	43.0	0.90%	369.5	0.83%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.107e+00	0.4640	1330.0	27.85%	12197.0	27.55%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.079e+00	0.4738	47.0	0.98%	407.9	0.92%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.079e+00	0.4738	47.0	0.98%	407.9	0.92%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.073e+00	0.4751	73.0	1.53%	642.6	1.45%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.047e+00	0.4861	33.0	0.69%	283.9	0.64%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.031e+00	0.4925	221.0	4.63%	1996.2	4.51%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.741e-01	0.5196	17.0	0.36%	143.8	0.32%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.278e-01	0.5424	319.0	6.68%	2911.9	6.58%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.965e-01	0.5579	103.0	2.16%	930.6	2.10%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-8.834e-01	0.5635	29.0	0.61%	255.0	0.58%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.563e-01	0.5771	204.0	4.27%	1863.8	4.21%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-8.462e-01	0.5811	70.0	1.47%	632.8	1.43%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.403e-01	0.5827	35.0	0.73%	312.8	0.71%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.320e-01	0.5857	10.0	0.21%	85.2	0.19%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.999e-01	0.6029	55.0	1.15%	498.6	1.13%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-7.872e-01	0.6087	50.0	1.05%	453.2	1.02%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.685e-01	0.6183	142.0	2.97%	1303.8	2.95%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-7.598e-01	0.6218	249.0	5.21%	2293.7	5.18%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-7.553e-01	0.6226	160.0	3.35%	1471.5	3.32%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.493e-01	0.6245	294.0	6.16%	2711.0	6.12%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-7.335e-01	0.6324	144.0	3.02%	1326.6	3.00%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.212e-01	0.6383	405.0	8.48%	3744.3	8.46%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-7.180e-01	0.6384	616.0	12.90%	5699.7	12.88%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-6.879e-01	0.6559	493.0	10.32%	4567.8	10.32%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.643e-01	0.6695	107.0	2.24%	992.8	2.24%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-6.120e-01	0.7033	1152.0	24.12%	10702.4	24.18%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.885e-01	0.7178	291.0	6.09%	2715.3	6.13%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.844e-01	0.7186	48.0	1.01%	451.9	1.02%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.747e-01	0.7234	62.0	1.30%	583.6	1.32%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.640e-01	0.7291	38.0	0.80%	359.3	0.81%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.568e-01	0.7321	44.0	0.92%	416.8	0.94%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-5.486e-01	0.7360	349.0	7.31%	3264.7	7.38%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-5.479e-01	0.7360	2.0	0.04%	18.7	0.04%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.422e-01	0.7363	141.0	2.95%	1326.6	3.00%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.347e-01	0.7396	101.0	2.11%	953.6	2.15%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-5.274e-01	0.7429	489.0	10.24%	4573.0	10.33%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.269e-01	0.7429	5.0	0.10%	48.2	0.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.233e-01	0.7429	175.0	3.66%	1647.7	3.72%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.163e-01	0.7446	21.0	0.44%	203.0	0.46%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.909e-01	0.7615	33.0	0.69%	318.4	0.72%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-4.687e-01	0.7764	4.0	0.08%	41.0	0.09%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.614e-01	0.7798	18.0	0.38%	177.4	0.40%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-4.234e-01	0.8077	160.0	3.35%	1526.2	3.45%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.439e-01	0.8720	106.0	2.22%	1032.9	2.33%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.393e-01	0.8735	230.0	4.82%	2206.8	4.99%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.168e-01	0.8908	124.0	2.60%	1209.3	2.73%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.031e-01	0.9006	182.0	3.81%	1763.3	3.98%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-3.017e-01	0.9006	272.0	5.70%	2614.7	5.91%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.828e-01	0.9138	536.0	11.22%	5104.1	11.53%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.721e-01	0.9210	20.0	0.42%	213.2	0.48%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.704e-01	0.9210	647.0	13.55%	6151.3	13.90%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.494e-01	0.9368	15.0	0.31%	165.9	0.37%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.365e-01	0.9464	7.0	0.15%	83.6	0.19%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.359e-01	0.9464	84.0	1.76%	845.8	1.91%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.278e-01	0.9493	467.0	9.78%	4484.2	10.13%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.217e-01	0.9525	76.0	1.59%	771.4	1.74%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.065e-01	0.9644	206.0	4.31%	2024.2	4.57%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.031e-01	0.9650	209.0	4.38%	2054.1	4.64%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.771e-01	0.9877	18.0	0.38%	205.7	0.46%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.721e-01	0.9899	1925.0	40.31%	18152.2	41.01%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.422e-01	1.0000	31.0	0.65%	345.5	0.78%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.422e-01	1.0000	31.0	0.65%	345.5	0.78%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.410e-01	1.0000	90.0	1.88%	933.0	2.11%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.353e-01	1.0000	22.0	0.46%	254.3	0.57%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.247e-01	1.0000	93.0	1.95%	968.5	2.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.244e-01	1.0000	54.0	1.13%	582.2	1.32%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.128e-01	1.0000	53.0	1.11%	576.6	1.30%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.127e-01	1.0000	825.0	17.27%	7947.9	17.96%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-9.489e-02	1.0000	823.0	17.23%	7951.5	17.96%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-9.486e-02	1.0000	395.0	8.27%	3898.3	8.81%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-9.040e-02	1.0000	90.0	1.88%	955.2	2.16%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.944e-02	1.0000	128.0	2.68%	1330.9	3.01%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.840e-02	1.0000	258.0	5.40%	2592.8	5.86%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.764e-02	1.0000	19.0	0.40%	234.5	0.53%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-7.630e-02	1.0000	145.0	3.04%	1506.8	3.40%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.408e-02	1.0000	9.0	0.19%	127.3	0.29%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.167e-02	1.0000	209.0	4.38%	2134.1	4.82%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.810e-02	1.0000	7.0	0.15%	105.1	0.24%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-6.428e-02	1.0000	311.0	6.51%	3128.6	7.07%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.562e-02	1.0000	38.0	0.80%	448.4	1.01%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.988e-02	1.0000	121.0	2.53%	1293.5	2.92%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.904e-02	1.0000	224.0	4.69%	2306.2	5.21%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-4.404e-02	1.0000	832.0	17.42%	8130.2	18.37%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.003e-02	1.0000	1.0	0.02%	30.5	0.07%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.427e-02	1.0000	90.0	1.88%	1000.5	2.26%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.224e-02	1.0000	2.0	0.04%	49.5	0.11%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.626e-02	1.0000	767.0	16.06%	7570.4	17.10%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.181e-02	1.0000	4.0	0.08%	91.4	0.21%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.762e-03	1.0000	24.0	0.50%	344.2	0.78%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-6.816e-03	1.0000	432.0	9.05%	4469.0	10.10%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.799e-03	1.0000	103.0	2.16%	1199.1	2.71%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.637e-03	1.0000	230.0	4.82%	2504.3	5.66%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-3.782e-03	1.0000	727.0	15.22%	7364.3	16.64%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.241e-03	1.0000	144.0	3.02%	1651.2	3.73%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.462e-03	1.0000	14.0	0.29%	257.4	0.58%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.050e-04	1.0000	298.0	6.24%	3268.6	7.38%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.660e-04	1.0000	28.0	0.59%	446.0	1.01%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.980e-04	1.0000	1113.0	23.30%	11260.4	25.44%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.670e-04	1.0000	17.0	0.36%	324.4	0.73%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.340e-04	1.0000	258.0	5.40%	2952.7	6.67%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.150e-04	1.0000	82.0	1.72%	1104.4	2.50%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.140e-04	1.0000	212.0	4.44%	2486.3	5.62%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-9.900e-05	1.0000	374.0	7.83%	4139.2	9.35%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.800e-05	1.0000	1883.0	39.43%	18630.6	42.09%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.000e-05	1.0000	291.0	6.09%	3331.9	7.53%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.500e-05	1.0000	948.0	19.85%	9848.7	22.25%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.200e-05	1.0000	101.0	2.11%	1377.0	3.11%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.000e-06	1.0000	1449.0	30.34%	14776.2	33.38%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.000e-06	1.0000	983.0	20.58%	10407.8	23.51%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.000e-06	1.0000	338.0	7.08%	3991.6	9.02%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	120.0	2.51%	1675.9	3.79%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	1067.0	22.34%	11559.9	26.12%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-0.000e+00	1.0000	1027.0	21.50%	11181.4	25.26%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	1429.0	29.92%	15074.1	34.05%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	1061.0	22.22%	11656.0	26.33%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	222.0	4.65%	3109.1	7.02%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	992.0	20.77%	11371.5	25.69%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	1041.0	21.80%	13299.1	30.04%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	965.0	20.21%	11308.6	25.55%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	8.7	0.02%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	460.0	9.63%	7334.4	16.57%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	33.0	0.69%	982.5	2.22%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	182.0	3.81%	2963.3	6.69%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	529.0	11.08%	6914.4	15.62%
