| add_journal | Add a journal's citation style to the project |
| affiliations | The affiliations of the manuscript, under the authors |
| checks | Check a project before rendering it |
| check_citations | Check a project before rendering it |
| check_crossrefs | Check a project before rendering it |
| check_data | Check a project before rendering it |
| check_packages | Check a project before rendering it |
| check_renv | Check a project before rendering it |
| check_species | Which scientific names of the references go in italics |
| check_species_text | Check the scientific names in the text |
| check_title | Check a project before rendering it |
| clean_cache | Clear the knitr cache |
| convert_data | Convert or copy originals into the project's data folder |
| create_example_paper | Create an example project: a small study, written as an easypaper paper |
| create_paper | Create a reproducible Quarto manuscript project |
| deposit_zenodo | Reserve the DOI of the data deposit on Zenodo |
| edit_metadata | Describe the data deposit by hand |
| export_code | Write the analysis code as one script |
| export_figure_formats | Copy every figure to JPEG and TIFF |
| get_paper | Which paper is named |
| italicize_species | Set the scientific names of a bibliography in italics |
| list_journals | The journals a project can render for |
| make_preprint | Build a preprint deposit |
| make_submission | Build the folder you send to a journal |
| manuscript_stats | A summary of the manuscript |
| preview | Render the manuscript |
| render | Render the manuscript |
| render_all | Render the manuscript |
| render_docx | Render the manuscript |
| render_html | Render the manuscript |
| render_pdf | Render the manuscript |
| render_supplementary | Render the manuscript |
| set_paper | Name the paper to work on |
| sync_licenses | Copy the authors into the licences |
| sync_metadata | Fill in what the data deposit's metadata can know by itself |
| td_download | Edit a section with co-authors in Google Docs |
| td_update | Edit a section with co-authors in Google Docs |
| td_upload | Edit a section with co-authors in Google Docs |
| trackdown | Edit a section with co-authors in Google Docs |
| write_packages_bib | Write the references of the R packages a manuscript uses |