Training Set Determination for Genomic Selection


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Documentation for package ‘TSDFGS’ version 3.0.0

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TSDFGS-package TSDFGS: Training Set Determination for Genomic Selection
aopt_score A-optimality score
avg_grm_minmax_score Avg_GRM_MinMax score
avg_grm_score Avg_GRM score
avg_grm_self_score Avg_GRM_self score
cdmax_score CDmax score
cdmean2_score CDmean(v2) score
cdmean_score CDmean score (GBLUP form)
cd_score CD-score
criteria List of training set criteria
dopt_score D-optimality score
eopt_score E-optimality score
FGCM Fit logistic growth curve model
geno Genotype information
gopt_score G-optimality score (GOPTPEV)
gv_average_score GVaverage score
gv_overall_score GVoverall score
mspe_score MSPE score of ridge regression
nt2r Simulate r-scores of each training set size
optTrain Optimal training set determination
pam_score PAM (k-medoids) cost
pevmax_score PEVmax score
pev_score PEV score
r_score r-score
SSDFGS Sample size determination for genomic selection
subpop Sub-population information
TSDFGS TSDFGS: Training Set Determination for Genomic Selection