# Flexible Integration of Single-Cell RNA-Seq Data

## Documentation for package ‘FIRM’ version 0.1.2

- DESCRIPTION file.

## Help Pages

ExampleData | Example single-cell datasets
FIRM | Flexible Integration of Single-Cell RNA-Seq Data
label_trans | Label transfer via k-NN (hard assignment)
label_trans_prob | Label transfer via k-NN (soft assignment / probabilities)
Local_Struct | Local structure preservation metric
match_score | Match score between query and reference neighbourhoods
Mixing_Metric | k-NN Mixing Metric
prep_data | Data preprocessing for FIRM integration
SelectGene | Select consensus genes across multiple HVG lists
Select_hvg | Combine or select top HVGs from saved prep_data outputs