Integrated Retrieval and Analysis of 'PubMed', 'NIH', and 'NLM' Literature Data


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Documentation for package ‘puremoe’ version 1.1.0

Help Pages

citation_network Build a Citation Network from an iCite Corpus
citation_snowball Expand a PMID Corpus via One-Hop iCite Citation Snowballing
data_mesh_frequencies MeSH Descriptor Frequencies Across PubMed
data_mesh_thesaurus Download and Combine 'MeSH' and Supplemental Thesauruses
data_mesh_trees Download and Load 'MeSH' Trees Data
endpoint_info Get Information About Available Endpoints
get_records Retrieve Data from 'NLM'/'PubMed' databases Based on PMIDs
mesh_keyness MeSH Descriptor Keyness for a Retrieved Corpus
pmid_to_ftp Convert PubMed IDs (PMIDs) to PMC IDs and Full-Text URLs
pmid_to_pmc Convert PubMed IDs (PMIDs) to PMC IDs
pubtator_context Add Sentence Context to PubTator Entities and Relations
pubtator_cooccurrence Count PubTator Entity Co-occurrence from Sentence Context
pubtator_network Build a PubTator Relation Network with Evidence
search_pubmed Search 'PubMed' Records