HMM Toolkit for Inferring IBD Segments from SNP Data
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Documentation for package ‘ibdfindr’ version 0.5.0
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| brothersX | Dataset with X-chromosomal SNP genotypes for two brothers |
| computePR | Precision and Recall for IBD segment calls |
| cousinsDemo | Dataset with autosomal SNP genotypes for two cousins |
| estimateDropout | Estimate allelic dropout |
| findIBD | All-in-one workflow for finding IBD segments |
| findSegments | Identify IBD segments |
| fitHMM | Fit a Hidden Markov Model to genotype data |
| ibdPosteriors | IBD posteriors |
| plotIBD | Plot IBD segments and posteriors |
| problemMarkers | Identify problematic markers |
| readGL | Read genotype likelihood data |
| sibsGL | Dataset with genotype likelihoods for two full siblings |
| totalLoglik | Total log-likelihood for observed data |