Analysing RNA Splicing in Single-Cell RNA Sequencing Data
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Documentation for package ‘splikit’ version 2.3.1
Help Pages
| find_variable_events | Calculate the Sum Deviance for Inclusion and Exclusion Matrices |
| find_variable_genes | Find Variable Genes Using Variance or Deviance-Based Metrics |
| get_pseudo_correlation | Compute Pseudo-Correlation Using Beta-Binomial Model |
| get_rowVar | Calculate Row-wise Variance for Dense or Sparse Matrices |
| get_silhouette_mean | Compute Average Silhouette Width with Logging |
| load_toy_M1_M2_object | Load the toy M1/M2 object |
| load_toy_SJ_object | Load the toy SJ object |
| make_eventdata_plus | make_eventdata_plus |
| make_gene_count | make_gene_count |
| make_junction_ab | make_junction_ab |
| make_m1 | make_m1 |
| make_m2 | make_m2 (Integrated with Automatic Batching) |
| make_velo_count | Process Spliced and Unspliced Counts from Velocyto Outputs |
| plot_exclusive_junctions | Plot transcript-exclusive splice junctions |
| plot_exclusive_junctions_event | Plot transcript-exclusive splice junctions observed in eventdata |
| plot_exclusive_junctions_pdf | Multi-page PDF of transcript-exclusive junctions |
| print.splikit_junction_plot | Print method for splikit junction-plot results |
| splikit | Create a SplikitObject |
| SplikitObject | SplikitObject |