Model Rubisco Carboxylation Rate Across Temperature, CO2, and O2

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Documentation for package ‘rbcmodel’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

check_DHScale	Validator for the S3 class 'DHScale'
check_enzyme	Validator for the S3 class 'enzyme'
cite_Rbc	Cite data collected in the package.
CO2_comparison	Creates a combined model that compares two different enzymes
CO2_dependence	Function factory to model an enzyme's carbon output
DHScale	Create an DHScale instance by looking up the relevant data in database
Enzyme	Create an Enzyme instance by looking up the relevant data in database
kinetics_T_dep	Function factory for calculating temperature-dependent kinetics
last_non_NA	Return the last non-NA value from a vector.
make_4D_grid	Construct a 4D grid
mean_if_num	Compute the mean of a vector if the vector is numerical or logical. Otherwise, return the common value if all entries take the same value, or NA in any other cases.
median_if_num	Compute the median of a vector if the vector is numerical or logical. Otherwise, return the common value if all entries take the same value, or NA in any other cases.
merge_entries	Merge (combine) several entries from a data.frame.
modify_DHScale	Create a new instance of S3 class 'DHScale', starting from a previous instance
modify_enzyme	Create a new instance of S3 class 'enzyme' starting from a previous instance
new_DHScale	Constructor for the S3 class 'DHScale'.
new_enzyme	Constructor for the S3 class 'enzyme'.
permute_4D_grid	Permute the independent variables in a 4D grid created by make_4D_grid().
plot_slice_3D	Create a plot of the dependent variable in a 3D slice
print.DHScale	Customized print for S3 class 'DHScale'
print.enzyme	Customized print for S3 class 'enzyme'
refs_to_citation	References table
Rubisco_25C	Comprehensive Rubisco kinetics data
Rubisco_abridged	Abridged Rubisco kinetics data
Rubisco_aliases	Rubisco alias table
search_alias	Search for data of Rubisco enzyme alias from the database
search_DHScale	Search for temperature dependence DHScale from the database
search_enzyme	Search for data of Rubisco enzyme from the database
slice_4D_grid	Create a 3D slice of 4D grid created by make_4D_grid().
temp_dep_abridged	Abridged Delta H temperature scaling data
temp_dep_averaged	Averaged Delta H temperature scaling data
transpose_3D_slice	Transpose the non-constant independent variables in a 3D grid created by slice_4D_grid().