Antedependence Models for Longitudinal Data

[Up] [Top]

Documentation for package ‘antedep’ version 0.3.1

Help Pages

A B C D E F K L N P Q R S T V

-- A --

aic_cat Bayesian and Akaike Information Criteria for Antedependence Fits
aic_gau Bayesian and Akaike Information Criteria for Antedependence Fits
aic_inad Bayesian and Akaike Information Criteria for Antedependence Fits
anova.antedep Likelihood-Ratio Comparisons for Nested AD Fits
anova.cat_fit Likelihood-Ratio Comparisons for Nested AD Fits
anova.gau_fit Likelihood-Ratio Comparisons for Nested AD Fits
anova.inad_fit Likelihood-Ratio Comparisons for Nested AD Fits
as.ts.antedep_sim Convert Antedependence Simulation Output to a Time-Series Object
as.ts.cat_sim Convert Antedependence Simulation Output to a Time-Series Object
as.ts.gau_sim Convert Antedependence Simulation Output to a Time-Series Object
as.ts.inad_sim Convert Antedependence Simulation Output to a Time-Series Object

-- B --

Bell The Bell distribution
bic_cat Bayesian and Akaike Information Criteria for Antedependence Fits
bic_gau Bayesian and Akaike Information Criteria for Antedependence Fits
bic_inad Bayesian and Akaike Information Criteria for Antedependence Fits
bic_order_cat BIC-Based Order Selection for Categorical AD Models
bic_order_gau BIC-Based Order Selection for Gaussian AD Models
bic_order_inad BIC-Based Order Selection for INAD Models
bolus_inad Morphine Bolus Analgesia Counts

-- C --

cattle_growth Cattle Growth Data (Treatments A and B)
ci_cat Confidence Intervals for Fitted Categorical AD Models
ci_gau Confidence Intervals for Fitted Gaussian AD Models
ci_inad Confidence Intervals for Fitted INAD Models
cochlear_implant Cochlear Implant Speech Recognition Data
coef.antedep Extract Model Coefficients from Antedependence Fits
coef.cat_fit Extract Model Coefficients from Antedependence Fits
coef.gau_fit Extract Model Coefficients from Antedependence Fits
coef.inad_fit Extract Model Coefficients from Antedependence Fits
confint.antedep Confidence Intervals for Antedependence Model Fits
confint.cat_fit Confidence Intervals for Antedependence Model Fits
confint.gau_fit Confidence Intervals for Antedependence Model Fits
confint.inad_fit Confidence Intervals for Antedependence Model Fits

-- D --

dbell The Bell distribution
deviance.ad_fit Deviance for Antedependence Model Fits
deviance.antedep Deviance for Antedependence Model Fits
deviance.cat_fit Deviance for Antedependence Model Fits
deviance.gau_fit Deviance for Antedependence Model Fits
deviance.inad_fit Deviance for Antedependence Model Fits

-- E --

em_cat EM Algorithm for Categorical AD Model Estimation
em_gau EM Algorithm for Gaussian AD Model Estimation
em_inad EM Algorithm for INAD Model Estimation

-- F --

fitted.gau_fit Fitted Values and Residuals for Gaussian AD Fits
fit_ad Unified Antedependence Model Fitting Interface
fit_cat Fit Categorical Antedependence Model by Maximum Likelihood
fit_gau Fit Gaussian Antedependence Model by Maximum Likelihood
fit_inad Fit INAD Antedependence Model by Maximum Likelihood

-- K --

kkt_inad First-Order Optimality Check for a Fitted INAD Model

-- L --

labor_force_cat Labor Force Longitudinal Categorical Data (Table 1)
logLik.ad_fit Log-Likelihood for Antedependence Model Fits
logLik.antedep Log-Likelihood for Antedependence Model Fits
logLik.cat_fit Log-Likelihood for Antedependence Model Fits
logLik.gau_fit Log-Likelihood for Antedependence Model Fits
logLik.inad_fit Log-Likelihood for Antedependence Model Fits
logL_cat Log-Likelihood for Categorical AD Models
logL_gau Log-Likelihood for Gaussian AD Models
logL_inad Log-Likelihood for INAD Models (with Missing Data Support)
logL_inad_i INAD Log-Likelihood Contribution at Time i

-- N --

nobs.ad_fit Number of Subjects for Antedependence Model Fits
nobs.antedep Number of Subjects for Antedependence Model Fits
nobs.cat_fit Number of Subjects for Antedependence Model Fits
nobs.gau_fit Number of Subjects for Antedependence Model Fits
nobs.inad_fit Number of Subjects for Antedependence Model Fits

-- P --

partial_corr Compute Intervenor-Adjusted Partial Correlation Matrix
pbell The Bell distribution
plot.cat_fit Plot marginal probabilities of a categorical AD fit
plot.gau_fit Plot estimated parameters of a Gaussian AD fit
plot.inad_fit Plot estimated parameters of an INAD fit
plot.partial_corr Heatmap plot for a partial_corr object
plot_prism PRISM Plot (Partial Residual Intervenor Scatterplot Matrix)
plot_profile Profile Plot (Spaghetti Plot) for Longitudinal Data
predict.inad_fit Predict from an INAD fit
print.bic_order_cat Print Method for Categorical BIC Order Selection
print.cat_ci Print method for cat_ci objects
print.cat_fit Print method for cat_fit objects
print.cat_lrt Print method for cat_lrt objects
print.cat_order_tests Print Method for Categorical Order Test Collections
print.gau_bic_order Print method for BIC order selection
print.gau_ci Print method for AD confidence intervals
print.gau_contrast_test Print method for AD contrast test
print.gau_fit Print Method for gau_fit Objects
print.gau_homogeneity_test Print method for AD homogeneity test
print.gau_mean_test Print method for AD mean test
print.gau_order_test Print method for AD order test
print.homogeneity_tests_inad Print method for homogeneity_tests_inad
print.inad_ci Print method for INAD confidence intervals
print.inad_fit Print Method for INAD Model Fits
print.stationarity_tests_cat Print Method for Categorical Stationarity Test Collections
print.test_homogeneity_inad Print method for test_homogeneity_inad

-- Q --

qbell The Bell distribution

-- R --

race_100km 100km Race Split-Time Data
rbell The Bell distribution
residuals.gau_fit Fitted Values and Residuals for Gaussian AD Fits
run_homogeneity_tests_inad Run All Homogeneity Tests for INAD
run_order_tests_cat Run All Pairwise Order Tests for Categorical AD
run_stationarity_tests_cat Run All Stationarity-Related Tests for Categorical AD
run_stationarity_tests_gau Run All Stationarity-Related Tests for Gaussian AD
run_stationarity_tests_inad Run All Stationarity-Related Tests for INAD

-- S --

simulate_cat Simulate Categorical Antedependence Series
simulate_gau Simulate Gaussian Antedependence Series
simulate_inad Simulate INAD Antedependence Series
summary.cat_ci Summary method for cat_ci objects
summary.cat_fit Summary method for cat_fit objects
summary.gau_ci Summary method for gau_ci objects
summary.gau_fit Summary method for gau_fit objects
summary.inad_ci Summary method for inad_ci objects
summary.inad_fit Summary Method for INAD Model Fits
summary.partial_corr Summary method for partial_corr objects

-- T --

test_contrast_gau Test Linear Hypotheses on the Mean Under Antedependence
test_homogeneity_cat Likelihood Ratio Test for Homogeneity Across Groups (Categorical AD Data)
test_homogeneity_gau Likelihood Ratio Test for Homogeneity Across Groups (Gaussian AD Data)
test_homogeneity_inad Likelihood Ratio Test for Homogeneity Across Groups (INAD Data)
test_one_sample_gau One-Sample Test for Mean Structure Under Antedependence
test_order_cat Likelihood Ratio Test for Antedependence Order (Categorical AD Data)
test_order_gau Likelihood Ratio Test for Antedependence Order (Gaussian AD Data)
test_order_inad Likelihood Ratio Test for Antedependence Order (INAD Data)
test_stationarity_cat Likelihood Ratio Test for Stationarity (Categorical AD Data)
test_stationarity_gau Likelihood Ratio Test for Stationarity (Gaussian AD Data)
test_stationarity_inad Likelihood Ratio Test for Time-Invariance (INAD Data)
test_timeinvariance_cat Likelihood Ratio Test for Time-Invariance (Categorical Data)
test_two_sample_gau Two-Sample Test for Mean Structure Under Antedependence

-- V --

vcov.antedep Variance-Covariance Matrices for Antedependence Model Fits
vcov.cat_fit Variance-Covariance Matrices for Antedependence Model Fits
vcov.gau_fit Variance-Covariance Matrices for Antedependence Model Fits
vcov.inad_fit Variance-Covariance Matrices for Antedependence Model Fits