Bioinformatic Distances

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Documentation for package ‘BIDistances’ version 0.1.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calculateMemoryDemandGPU	Plan Device-Memory Batches for Weighted Euclidean Distances
CosinusDistance	Cosine Distance
Dist2All	Distances from One Point to All Rows of a Matrix
DistanceDistributions	Distance Distribution
DistanceMatrix	Pairwise Distance, Dissimilarity, or Similarity Matrix
EuclideanDistances_GPU	Weighted Euclidean Distances with an Optional OpenCL Backend
fastPdist	fastPdist
fastPdistC	fastPdist
FractionalDistance	Calculates fractional distances
GiniDist	Gini Distance Between Features
Hearingloss_N109	Hearingloss data
Hellinger4ConditionalPDF	Hellinger4ConditionalPDF
Hepta	Hepta introduced in [Ultsch, 2003]
jaccard	Computes dissimilarity indices Jaccard
knneighborDistances	Find Nearest Neighbors from a Distance Matrix
Kullback_Leibler_div	Kullback-Leibler divergence
Mahalanobis	Pairwise Squared Generalized Mahalanobis Distances
msmd	msmd
nearest	Nearest
pdistToroid	Calculate toroid Euclidean Distances
SharedNeighborDistance	Shared Neighbor Distance
Tfidf_dist	Term frequency-inverse document frequency distance
ToroidDist2All	Calculate Toroidal Euclidean Distances
TransformSimilarity2MetricDistance	TransformSimilarity2MetricDistance
twed	twed
VariablePrecision	VariablePrecision
WassersteinDist	Wasserstein Distance