ravepipeline 0.2.0

ravepipeline 0.1.1

• Added define_preference, use_preference, reset_preference, and remove_preference methods to the PipelineTools class: a preference is declared once with a domain, storage type, default, and optional validator, then read and written by its short name instead of its full key. Declared defaults are lazy, so the preference store only holds values that have been explicitly changed, and a revised default reaches anyone who never overrode it. reset_preference drops the stored value and keeps the declaration, so reads fall back to the default; remove_preference deletes both, leaving the preference undeclared
• Declaring a preference is now skipped when it is already up to date, so a module can declare on every launch without touching the disk. Each declaration records a version — the module’s, or this package’s for global preferences, whose metadata is shared across pipelines — and is only rewritten when that version moves. Revising a default, validator, getter, or type therefore takes effect on a version bump, or immediately with force = TRUE, which logs a warning and is meant for development rather than production
• Preferences gain an optional getter that maps the stored value to whatever the caller should receive, for instance turning a palette name into the colors themselves. use_preference applies it by default and tags the result with the value it was derived from in a preference_value attribute; pass apply_getter = FALSE to read the raw stored value instead
• Added define_preference_multichoice and define_preference_logical, which declare a preference restricted to a fixed set of choices, or a TRUE/FALSE flag, building the validator so that a declaration only needs the choices or the default. define_preference_multichoice takes partial_match, in which case a unique abbreviation is accepted, stored as it was given, and expanded to the full choice on read
• KEY_MISSING is now exported, so that a wrapper around use_preference can take it as the “no value supplied” default and forward it unchanged to read the preference instead of writing it
• Added DISCRETE_COLORMAPS and CONTINUOUS_COLORMAPS, the built-in qualitative and continuous color palettes, along with define_preference_discrete_colormap and define_preference_continuous_colormap, which declare a palette preference validated against the matching table and resolve it to the colors on read
• Building a pipeline now estimates and reports the size of each target as it is built, so unexpectedly large intermediate objects are easier to spot
• RAVEFileArray serialization now carries the file array signature header entries alongside the file base and mode, so downstream caches can see them
• Added pkg_available_reports and pkg_build_report, which list and render the R Markdown reports a package ships under its inst/reports directory. A report is named by its path relative to that directory without the extension, so reports may be grouped into sub-folders, and the name is matched ignoring case. A shared common.css and a per-report <report>_styles.css are picked up automatically and attached to the rendered document

ravepipeline 0.1.0

• Added pipeline_plot_data to help dispatch plot methods defined from within a pipeline, keeping plot logic encapsulated inside the pipeline script
• Added pipeline_translate_settings, pipeline_export_wizard, and pipeline_import_wizard for translating and migrating settings between pipeline versions or modules
• Added import_settings method to the PipelineTools class for importing external settings directly into a pipeline instance; fixed an edge case where the internal settings map was a fastmap2 instead of a plain list
• Pipeline subset operator (pipeline[[...]]) now reads from settings.yaml when the pipeline has not yet been evaluated, providing access to default inputs before a run
• pipeline_get_preferences gains a modes argument for type-mode validation; stored values whose mode() does not match are treated as missing and ifnotfound is returned instead
• Added html_embed_write and html_embed_read to embed and recover arbitrary R objects as hidden data inside HTML documents
• JSON serialization sanitizes inputs before passing them to jsonlite, preventing conversion errors for types that jsonlite cannot encode
• pandoc discovery is now more robust and integrated into RAVE options; fixed RSTUDIO_PANDOC not being set in some environments; fixed pandoc not found on certain systems
• Pipeline reports no longer force toc and code_folding; these can now be customized by the caller; distill is used as an optional report style when the package is available, with rmarkdown as the fallback
• Added a callback argument to pipeline report generation for post-processing hooks; start_job gains log-streaming support so outputs always stream to the console; fixed a log-set bug when the job result is NULL and changed the default behavior to not attach the log file
• lapply_jobs now evaluates the worker function in the runtime_env environment so global helper functions defined in the same script can reference each other correctly
• PipelineTools$run_as_task enables running a pipeline as a shiny ExtendedTask, allowing non-blocking pipeline execution inside a Shiny app without blocking the session; pipelines also support early cancellation
• Added MCP helper utilities (docs_package_help_topics, docs_help_page, docs_package_implementation, search_package_info) for use with rave-pipelines repository tooling
• Pipeline templates are updated to match the latest shidashi framework changes; a timestamp is written on template updates; Python sub-module presence is verified before import
• ravepipeline_finalize_installation is now exported for post-install setup
• Miscellaneous fixes: corrected detect_generic_land() lookup, tightened embedding metadata accuracy, and removed obsolete vignettes

ravepipeline 0.0.3

• Removed raveio from templates
• Internally, rs_job considers Positron-IDE
• Fixed incorrect path issue when the report working directory and output folder are identical
• Using distill for default report style, if available
• Added SVG plots to allow image overlays
• Added base64URI; using base64enc for more general base64 converter
• Fixed a bug where lapply_jobs callback fail to run due to zero-length messages
• Job processes are killed by default when the job is removed
• start_job uses callr for maximized consistency by default
• During @unmarshal, the package is loaded by default
• Pipeline serialization has been implemented
• Stores process handlers in the job ID to avoid the process to be shut down accidentally by garbage collector
• Fixed pipeline paths, added behavior for subjects
• Pipeline report has more allowed tweaks (theme, style, parameter)
• Implemented serialization for brain object

ravepipeline 0.0.2

• with_rave_parallel with one worker no longer runs in background, though users can force enabling this
• Added comparisons to RAVESerializable objects, allowing comparisons of two R6 objects inheriting this class
• Added RAVEFileArray to wrap against FileArray, allowing file-arrays to be serialized faster when running with mirai
• Added lapply_jobs, allowing down-stream packages to use it for looping with similar behaviors to lapply, while giving users options to parallel computing the results with with_rave_parallel
• Added RAVESerializable class for mirai, allowing for fast serialization when running lapply_jobs
• cat2 is no longer used as logging system and used logger instead
• Added rave_progress to replace dipsaus; removed dependencies on dipsaus
• Migrated logger from ravedash so this function can be used by ravecore and other depending packages
• Added print method to background jobs
• Added mirai as the optional background engine to run jobs
• Pipeline evaluation will have RAVE_PIPELINE_ACTIVE environment set to "true" to allow fast compile and debugging
• pipeline$read once disabled by targets during evaluation can now runs again with hacks
• Pipeline attach method also mounts shared environment for debugging
• Implemented pipeline reporting functions
• Added start_job to start background jobs, which can be converted into promises
• Make sure installing new snippets overwrites existing scripts
• Unset reporters for older versions of targets
• Fixed lazy evaluation issues
• Fixed a bug introduced by targets version 1.11.1 where use-after-free of cli progress crashes the pipeline run, the newer versions of that package has fixed it too
• Added optional functions to handle old raveio calls
• Removed questions once asked
• save yaml format now sort native lists with sorted=TRUE
• Removed call_pkg_fun for rstudioapi and use the package functions directly to avoid messing up with sys.call()
• Fixed entrace
• Added pipeline collections

ravepipeline 0.0.1

• Initial CRAN submission.