--- title: "End-to-End Evidence and Publication Showcase" output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{End-to-End Evidence and Publication Showcase} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8} --- ```{r setup, include=FALSE} knitr::opts_chunk$set(collapse = TRUE, comment = "#>") ``` The expanded post-fit system separates fitting, diagnostics, sensitivity, simulation validation, provenance, publication output, and interpretation. ```{r, eval=FALSE} bundle <- create_analysis_bundle(fit, ndraws = 1000, include_loo = TRUE) bridge <- prior_posterior_bridge(fit) loo_atlas <- create_loo_influence_atlas( bundle$components$loo$value, data = fit$specification$prepared$data ) manifest <- create_analysis_manifest(fit = fit, estimands = "primary") card <- create_model_card( fit, analysis_bundle = bundle, manifest = manifest, label = "Primary model" ) dashboard <- create_diagnostic_dashboard( fit = fit, analysis_bundle = bundle, model_card = card, loo = loo_atlas, prior_posterior = bridge, sensitivity = prior_sensitivity, recovery = recovery, sbc = sbc_result, label = "Primary-model evidence" ) inventory <- create_complete_evidence_inventory( bundle = bundle, model_card = card, loo = loo_atlas, prior_posterior = bridge, sensitivity = prior_sensitivity, recovery = recovery, sbc = sbc_result ) ``` No dashboard, registry, sensitivity result, recovery result, SBC graphic, or LOO diagnostic automatically establishes causal validity or selects a preferred model.