Last updated on 2026-01-16 05:51:18 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| admiralmetabolic | 1 | 2 | 10 |
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 0.2.0
Check: relative paths in package URLs
Result: NOTE
Found the following (possibly) invalid URL:
URL: ../reference/index.html
From: inst/doc/admiralmetabolic.html
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in 'admiralmetabolic-Ex.R' failed
The error most likely occurred in:
> ### Name: derive_param_waisthgt
> ### Title: Adds a Parameter for Waist to Height Ratio
> ### Aliases: derive_param_waisthgt
> ### Keywords: der_prm_advs
>
> ### ** Examples
>
> library(tibble)
> library(rlang)
>
> # Example 1: Derive Waist to Height Ratio where Height is measured only once
>
> advs <- tribble(
+ ~USUBJID, ~PARAMCD, ~PARAM, ~AVAL, ~AVALU, ~VISIT,
+ "01-101-1001", "HEIGHT", "Height (cm)", 147, "cm", "SCREENING",
+ "01-101-1001", "WSTCIR", "Waist Circumference (cm)", 110, "cm", "SCREENING",
+ "01-101-1001", "WSTCIR", "Waist Circumference (cm)", 108, "cm", "WEEK 2",
+ "01-101-1001", "WSTCIR", "Waist Circumference (cm)", 107, "cm", "WEEK 3",
+ "01-101-1002", "HEIGHT", "Height (cm)", 163, "cm", "SCREENING",
+ "01-101-1002", "WSTCIR", "Waist Circumference (cm)", 120, "cm", "SCREENING",
+ "01-101-1002", "WSTCIR", "Waist Circumference (cm)", 118, "cm", "WEEK 2",
+ "01-101-1002", "WSTCIR", "Waist Circumference (cm)", 117, "cm", "WEEK 3",
+ )
>
> derive_param_waisthgt(
+ advs,
+ by_vars = exprs(USUBJID, VISIT),
+ wstcir_code = "WSTCIR",
+ height_code = "HEIGHT",
+ set_values_to = exprs(
+ PARAMCD = "WAISTHGT",
+ PARAM = "Waist to Height Ratio"
+ ),
+ constant_by_vars = exprs(USUBJID),
+ get_unit_expr = admiral::extract_unit(PARAM)
+ )
Error in inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars)) :
could not find function "inner_join"
Calls: derive_param_waisthgt -> derive_param_ratio -> derive_param_computed
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat) # nolint: undesirable_function_linter
> library(admiralmetabolic) # nolint: undesirable_function_linter
>
> test_check("admiralmetabolic")
Saving _problems/test-derive_param_ratio-77.R
Saving _problems/test-derive_param_ratio-127.R
i Unit conversion performed for "HIPCIR". Values converted from "in" to "cm".
Saving _problems/test-derive_param_waisthgt-26.R
i Unit conversion performed for "HEIGHT". Values converted from "cm" to "in".
Saving _problems/test-derive_param_waisthgt-123.R
i Unit conversion performed for "HIPCIR". Values converted from "cm" to "in".
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 9 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-derive_param_ratio.R:66:5'): derive_param_computed Test 2: Cross-check with derive_param_computed(),
new observations with constant denominator ──
Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"
Backtrace:
▆
1. └─admiralmetabolic:::derive_param_ratio(...) at test-derive_param_ratio.R:66:5
2. └─admiral::derive_param_computed(...)
── Error ('test-derive_param_ratio.R:116:5'): derive_param_computed Test 3: Cross-check with derive_param_computed(),
new observations with constant numerator ──
Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"
Backtrace:
▆
1. └─admiralmetabolic:::derive_param_ratio(...) at test-derive_param_ratio.R:116:5
2. └─admiral::derive_param_computed(...)
── Error ('test-derive_param_waisthgt.R:17:5'): derive_param_waisthgt Test 1: Cross-check with admiral::derive_param_computed(),
new observations with constant Height ──
Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"
Backtrace:
▆
1. └─admiralmetabolic::derive_param_waisthgt(...) at test-derive_param_waisthgt.R:17:5
2. └─admiralmetabolic:::derive_param_ratio(...)
3. └─admiral::derive_param_computed(...)
── Error ('test-derive_param_waisthgt.R:113:5'): derive_param_waisthgt Test 3: Cross-check with and without units conversion ──
Error in `inner_join(hori_data, hori_const_data, by = vars2chr(constant_by_vars))`: could not find function "inner_join"
Backtrace:
▆
1. ├─... %>% filter(PARAMCD == "WAISTHGT") at test-derive_param_waisthgt.R:113:5
2. ├─dplyr::filter(., PARAMCD == "WAISTHGT")
3. └─admiralmetabolic::derive_param_waisthgt(...)
4. └─admiralmetabolic:::derive_param_ratio(...)
5. └─admiral::derive_param_computed(...)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 9 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64