CRAN Package Check Results for Maintainer ‘Henrik Bengtsson <henrikb at braju.com>’

Last updated on 2026-07-15 07:50:14 CEST.

Package ERROR NOTE OK
ACNE 13
aroma.affymetrix 13
aroma.apd 13
aroma.cn 13
aroma.core 13
calmate 2 11
dChipIO 13
doFuture 13
future 13
future.apply 13
future.batchtools 13
future.callr 13
future.mirai 13
future.tests 13
futureverse 13
futurize 1 12
globals 13
listenv 13
matrixStats 13
parallelly 13
port4me 13
profmem 13
progressify 13
progressr 13
PSCBS 13
R.cache 13
R.devices 13
R.filesets 13
R.huge 13
R.matlab 13
R.methodsS3 2 11
R.oo 13
R.rsp 13
R.utils 13
seguid 13
startup 13
TopDom 13

Package ACNE

Current CRAN status: OK: 13

Package aroma.affymetrix

Current CRAN status: OK: 13

Package aroma.apd

Current CRAN status: OK: 13

Package aroma.cn

Current CRAN status: OK: 13

Package aroma.core

Current CRAN status: OK: 13

Package calmate

Current CRAN status: NOTE: 2, OK: 11

Version: 0.13.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package dChipIO

Current CRAN status: OK: 13

Package doFuture

Current CRAN status: OK: 13

Package future

Current CRAN status: OK: 13

Package future.apply

Current CRAN status: OK: 13

Package future.batchtools

Current CRAN status: OK: 13

Package future.callr

Current CRAN status: OK: 13

Package future.mirai

Current CRAN status: OK: 13

Package future.tests

Current CRAN status: OK: 13

Package futureverse

Current CRAN status: OK: 13

Package futurize

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0.0
Check: tests
Result: ERROR Running ‘test-api.R’ [52s/66s] Running ‘test-doFuture-foreach_dofuture,errors.R’ [20s/38s] Running ‘test-doFuture-foreach_dofuture,globals.R’ [26s/40s] Running ‘test-doFuture-foreach_dofuture,nested_colon.R’ [17s/42s] Running ‘test-doFuture-foreach_dofuture,nested_dofuture.R’ [16s/57s] Running ‘test-doFuture-foreach_dofuture,rng.R’ [8s/14s] Running ‘test-doFuture-foreach_dofuture-options,nested.R’ Running ‘test-doFuture-foreach_dofuture.R’ [4s/10s] Running ‘test-doFuture-times.R’ Running ‘test-furrr-future_imap.R’ Running ‘test-furrr-future_map.R’ [6s/14s] Running ‘test-furrr-future_map2.R’ Running ‘test-furrr-future_modify.R’ Running ‘test-furrr-future_pmap.R’ [7s/12s] Running ‘test-furrr-future_walk.R’ Running ‘test-future.apply-future_Filter.R’ Running ‘test-future.apply-future_apply.R’ [10s/16s] Running ‘test-future.apply-future_by.R’ Running ‘test-future.apply-future_eapply.R’ Running ‘test-future.apply-future_kernapply.R’ Running ‘test-future.apply-future_lapply,RNG.R’ [26s/58s] Running ‘test-future.apply-future_lapply,globals.R’ [9s/17s] Running ‘test-future.apply-future_lapply.R’ [20s/31s] Running ‘test-future.apply-future_mapply,globals.R’ [5s/11s] Running ‘test-future.apply-future_mapply.R’ [5s/11s] Running ‘test-future.apply-future_replicate.R’ Running ‘test-future.apply-future_sapply.R’ [11s/21s] Running ‘test-future.apply-future_tapply.R’ Running ‘test-future.apply-future_vapply.R’ [8s/12s] Running ‘test-future.apply-globals,tricky2.R’ Running ‘test-future.apply-globals,tricky_recursive.R’ Running ‘test-future.apply-options,nested.R’ Running ‘test-future.apply-stdout.R’ [8s/12s] Running ‘test-futurize-BiocParallel.R’ [14s/21s] Running ‘test-futurize-DESeq2.R’ Running ‘test-futurize-DiceKriging.R’ [11s/18s] Running ‘test-futurize-GSVA.R’ Running ‘test-futurize-GenomicAlignments.R’ Running ‘test-futurize-Rsamtools.R’ Running ‘test-futurize-Sim.DiffProc.R’ Running ‘test-futurize-SimDesign.R’ [7s/15s] Running ‘test-futurize-SingleCellExperiment.R’ Running ‘test-futurize-SuperLearner.R’ Running ‘test-futurize-TSP.R’ Running ‘test-futurize-base-stats.R’ [19s/39s] Running ‘test-futurize-boot.R’ [6s/16s] Running ‘test-futurize-caret.R’ [23s/40s] Running ‘test-futurize-crossmap.R’ [7s/12s] Running ‘test-futurize-ez.R’ Running ‘test-futurize-fgsea.R’ Running ‘test-futurize-foreach.R’ Running ‘test-futurize-fwb.R’ Running ‘test-futurize-gamlss.R’ Running ‘test-futurize-glmmTMB.R’ Running ‘test-futurize-glmnet.R’ [10s/25s] Running ‘test-futurize-kernelshap.R’ Running ‘test-futurize-lme4.R’ [12s/26s] Running ‘test-futurize-metafor.R’ [6s/14s] Running ‘test-futurize-mgcv.R’ [6s/13s] Running ‘test-futurize-modelsummary.R’ [10s/19s] Running ‘test-futurize-parameters.R’ [9s/23s] Running ‘test-futurize-partykit.R’ [6s/16s] Running ‘test-futurize-pbapply.R’ [6s/13s] Running ‘test-futurize-pls.R’ [11s/17s] Running ‘test-futurize-plyr.R’ [15s/26s] Running ‘test-futurize-purrr.R’ [5s/10s] Running ‘test-futurize-pvclust.R’ Running ‘test-futurize-riskRegression.R’ Running ‘test-futurize-rugarch.R’ [8s/22s] Running ‘test-futurize-sandwich.R’ Running ‘test-futurize-scater.R’ Running ‘test-futurize-scuttle.R’ Running ‘test-futurize-seriation.R’ [14s/24s] Running ‘test-futurize-shapr.R’ [7s/12s] Running ‘test-futurize-stars.R’ Running ‘test-futurize-strucchange.R’ Running ‘test-futurize-sva.R’ Running ‘test-futurize-tm.R’ Running ‘test-futurize-vegan.R’ [18s/32s] Running ‘test-futurize-wrapped.R’ Running ‘test-internals-futurize.R’ Running ‘test-internals-make_options_for_nnn.R’ Running ‘test-internals.R’ Running the tests in ‘tests/test-futurize-lme4.R’ failed. Complete output: > #! /usr/bin/env Rscript > ## This runs testme test script inst/testme/test-futurize-lme4.R > ## Don't edit - it was autogenerated by inst/testme/deploy.R > futurize:::testme("futurize-lme4") Test 'futurize-lme4' ... chr "none" > if (requireNamespace("lme4") && getRversion() >= "4.4.0") { + library(futurize) + library(lme4) + options(future.rng.onMisuse = "error") .... [TRUNCATED] Loading required namespace: lme4 Loading required package: future Loading required package: Matrix Ordinary processing: bobyqa : [OK] Nelder_Mead : [OK] nlminbwrap : [OK] nmkbw : [OK] optimx.L-BFGS-B : [OK] nloptwrap.NLOPT_LN_NELDERMEAD : [OK] nloptwrap.NLOPT_LN_BOBYQA : [OK] original model: cbind(incidence, size - incidence) ~ period + (1 | herd) data: cbpp optimizers (7): bobyqa, Nelder_Mead, nlminbwrap, nmkbw, optimx.L-BFGS-B,nloptwrap.NLOPT_LN_N... differences in negative log-likelihoods: max= 3.85e-07 ; std dev= 1.48e-07 Futurized processing: bobyqa : [OK] Nelder_Mead : [OK] nlminbwrap : [OK] nmkbw : [OK] optimx.L-BFGS-B : [failed] nloptwrap.NLOPT_LN_NELDERMEAD : [OK] nloptwrap.NLOPT_LN_BOBYQA : [OK] Loading required namespace: optimx original model: cbind(incidence, size - incidence) ~ period + (1 | herd) data: cbpp optimizers (7): bobyqa, Nelder_Mead, nlminbwrap, nmkbw, optimx.L-BFGS-B,nloptwrap.NLOPT_LN_N... 1 optimizer(s) failed differences in negative log-likelihoods: max= 3.83e-07 ; std dev= 1.57e-07 Comparing results: Error: all_equal(gm_all, gm_all_truth) are not all TRUE Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Package globals

Current CRAN status: OK: 13

Package listenv

Current CRAN status: OK: 13

Package matrixStats

Current CRAN status: OK: 13

Package parallelly

Current CRAN status: OK: 13

Package port4me

Current CRAN status: OK: 13

Package profmem

Current CRAN status: OK: 13

Package progressify

Current CRAN status: OK: 13

Package progressr

Current CRAN status: OK: 13

Package PSCBS

Current CRAN status: OK: 13

Package R.cache

Current CRAN status: OK: 13

Package R.devices

Current CRAN status: OK: 13

Package R.filesets

Current CRAN status: OK: 13

Package R.huge

Current CRAN status: OK: 13

Package R.matlab

Current CRAN status: NOTE: 13

Version: 3.7.0
Check: Rd files
Result: NOTE checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package R.methodsS3

Current CRAN status: NOTE: 2, OK: 11

Version: 1.8.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package R.oo

Current CRAN status: OK: 13

Package R.rsp

Current CRAN status: OK: 13

Package R.utils

Current CRAN status: OK: 13

Package seguid

Current CRAN status: OK: 13

Package startup

Current CRAN status: OK: 13

Package TopDom

Current CRAN status: NOTE: 13

Version: 0.10.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.10.1
Check: Rd files
Result: NOTE checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup? 21 | Recommended range is in {5, ..., 20}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64