CGC_20211118            COSMIC-CGC genes mapped to PathwaySpace images.
Hallmarks_v2023_1_Hs_symbols
                        A list with Hallmark gene sets (v2023.1).
PCv12_pruned_igraph     A pruned and laid out igraph object from
                        Pathway Commons V12.
PathwaySpace-class      PathwaySpace: An S4 class for signal
                        propagation on image spaces.
buildPathwaySpace       Constructor of PathwaySpace-class objects.
circularProjection,PathwaySpace-method
                        Creating 2D-landscape images from graph
                        objects.
expDecay                Exponential decay function.
getPathwaySpace,PathwaySpace-method
                        Accessors for fetching slots from a
                        PathwaySpace object.
gimage                  An image matrix.
gtoys                   Toy 'igraph' objects.
length,PathwaySpace-method
                        Accessor function for PathwaySpace objects.
linearDecay             A simple linear decay function.
names,PathwaySpace-method
                        Accessor functions for PathwaySpace objects.
pathDistances           Calculate a pathway space distance between two
                        vectors.
plotPathDistances       Accessory function to plot pathway space
                        distances.
plotPathwaySpace,PathwaySpace-method
                        Plotting 2D-landscape images for the
                        PathwaySpace package.
polarProjection,PathwaySpace-method
                        Creating 2D-landscape images from graph
                        objects.
pspace.cols             A simple vector of colors for PathwaySpace
                        images.
silhouetteMapping,PathwaySpace-method
                        Decorating PathwaySpace images with graph
                        silhouettes.
summitMapping,PathwaySpace-method
                        Mapping summits on PathwaySpace images.
summitWatershed         Variation of the watershed algorithm for summit
                        detection.
vertexSignal,PathwaySpace-method
                        Accessor functions for fetching slots from a
                        PathwaySpace object.
vertexWeight,PathwaySpace-method
                        Accessor functions for fetching slots from a
                        PathwaySpace object.
weibullDecay            Weibull decay function.
