Package: parafac4microbiome
Title: Parallel Factor Analysis Modelling of Longitudinal Microbiome
        Data
Version: 1.3.3
Authors@R: c(
    person("Geert Roelof", "van der Ploeg", , "roel@simula.no", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0007-5204-3386")),
    person("Johan", "Westerhuis", , "j.a.westerhuis@uva.nl", role = "ctb",
           comment = c(ORCID = "0000-0002-6747-9779")),
    person("Anna", "Heintz-Buschart", , "a.u.s.heintzbuschart@uva.nl", role = "ctb",
           comment = c(ORCID = "0000-0002-9780-1933")),
    person("Age", "Smilde", , "a.k.smilde@uva.nl", role = "ctb",
           comment = c(ORCID = "0000-0002-3052-4644")),
    person("University of Amsterdam", role = c("cph", "fnd")))
Description: Creation and selection of PARAllel FACtor Analysis (PARAFAC)
    models of longitudinal microbiome data. You can import your own data with
    our import functions or use one of the example datasets to create your own
    PARAFAC models. Selection of the optimal number of components can be done
    using assessModelQuality() and assessModelStability(). The selected model can
    then be plotted using plotPARAFACmodel(). The Parallel Factor
    Analysis method was originally described by Caroll and Chang (1970)
    <doi:10.1007/BF02310791> and Harshman (1970)
    <https://www.psychology.uwo.ca/faculty/harshman/wpppfac0.pdf>.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
Imports: compositions, cowplot, doParallel, dplyr, foreach, ggplot2,
        ggpubr, lifecycle, magrittr, methods, multiway, parallel,
        pracma, rlang, rTensor, stats, tidyr
Depends: R (>= 2.10)
LazyData: true
Suggests: knitr, phyloseq, rmarkdown, TreeSummarizedExperiment (>=
        2.16.1), SummarizedExperiment (>= 1.38.1), testthat (>= 3.0.0),
        withr, readr, stringr, scales, ggpattern
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://grvanderploeg.com/parafac4microbiome/,
        https://github.com/GRvanderPloeg/parafac4microbiome/
BugReports: https://github.com/GRvanderPloeg/parafac4microbiome/issues
NeedsCompilation: no
Packaged: 2026-08-20 08:19:44 UTC; roelv
Author: Geert Roelof van der Ploeg [aut, cre] (ORCID:
    <https://orcid.org/0009-0007-5204-3386>),
  Johan Westerhuis [ctb] (ORCID: <https://orcid.org/0000-0002-6747-9779>),
  Anna Heintz-Buschart [ctb] (ORCID:
    <https://orcid.org/0000-0002-9780-1933>),
  Age Smilde [ctb] (ORCID: <https://orcid.org/0000-0002-3052-4644>),
  University of Amsterdam [cph, fnd]
Maintainer: Geert Roelof van der Ploeg <roel@simula.no>
Repository: CRAN
Date/Publication: 2026-08-21 05:41:20 UTC
Built: R 4.5.3; ; 2026-08-21 23:57:51 UTC; windows
