Muscle Near-Infrared Spectroscopy Processing and Analysis

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Documentation for package ‘mnirs’ version 0.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

analyse_kinetics	Analyse kinetics across mNIRS channels and intervals
analyse_kinetics.biexponential	Analyse kinetics across mNIRS channels and intervals
analyse_kinetics.exponential_drift	Analyse kinetics across mNIRS channels and intervals
analyse_kinetics.monoexponential	Analyse kinetics across mNIRS channels and intervals
analyse_kinetics.peak_slope	Analyse kinetics across mNIRS channels and intervals
analyse_kinetics.response_time	Analyse kinetics across mNIRS channels and intervals
analyse_kinetics.sigmoidal	Analyse kinetics across mNIRS channels and intervals
analyse_kinetics.sigmoidal_drift	Analyse kinetics across mNIRS channels and intervals
analyze_kinetics	Analyse kinetics across mNIRS channels and intervals
artinis_intervals.xlsx	10 Hz Artinis Oxysoft export recorded with Oxymon MKIII
biexponential	Biexponential function
breaks_timespan	Breaks for time span data
by_label	Specify interval boundaries by time, label, lap, or sample
by_lap	Specify interval boundaries by time, label, lap, or sample
by_sample	Specify interval boundaries by time, label, lap, or sample
by_time	Specify interval boundaries by time, label, lap, or sample
correct_blood_volume	Correct for blood volume changes
create_mnirs_data	Create an _mnirs_ data frame with metadata
example_mnirs	Get path to _mnirs_ example files
exponential_drift	Exponential-drift function
extract_intervals	Extract intervals from _mnirs_ data
filter_butter	Apply a Butterworth digital filter
filter_butterworth	Apply a Butterworth digital filter
filter_ma	Apply a moving average filter
filter_mnirs	Filter a data frame
filter_moving_average	Apply a moving average filter
format_hmmss	Format time span data as h:mm:ss
gompertz	Gompertz growth functions
gompertz_left	Gompertz growth functions
logistic	Generalised logistic function
monoexponential	Monoexponential function
moxy_intervals.csv	0.5 Hz Moxy onboard export
moxy_ramp.xlsx	2 Hz PerfPro export of Moxy data
palette_mnirs	Custom _mnirs_ colour palette
peak_slope	Peak linear slope
pionirs_occlusion.ftn	1 Hz PIONIRS NIRSBOX export
plot.mnirs	Plot _mnirs_ objects
plot.mnirs_kinetics	Plot _mnirs_ kinetics results
portamon_oxcap.xlsx	10 Hz Artinis Oxysoft export recorded with Portamon
print.mnirs	Methods for mnirs objects
print.mnirs_kinetics	Methods for mnirs_kinetics objects
read_mnirs	Read _mnirs_ data from file
replace_invalid	Replace outliers, invalid, and missing values in _mnirs_ data
replace_missing	Replace outliers, invalid, and missing values in _mnirs_ data
replace_mnirs	Replace outliers, invalid, and missing values in _mnirs_ data
replace_outliers	Replace outliers, invalid, and missing values in _mnirs_ data
resample_mnirs	Re-sample an _mnirs_ data frame
rescale_mnirs	Rescale data range
response_time	Fractional response time
scale_color_mnirs	Scales for custom _mnirs_ palette
scale_colour_mnirs	Scales for custom _mnirs_ palette
scale_fill_mnirs	Scales for custom _mnirs_ palette
shift_mnirs	Shift data range
sigmoidal_drift	Sigmoidal-drift function
SSbiexponential	Self-starting biexponential model
SSexponential_drift	Self-starting exponential-drift model
SSgompertz	Self-starting Gompertz models
SSgompertz_left	Self-starting Gompertz models
SSlogistic	Self-starting logistic model
SSmonoexponential	Self-starting monoexponential model
SSsigmoidal_drift	Self-starting sigmoidal-drift model
theme_mnirs	Custom _mnirs_ ggplot2 theme
train.red_intervals.csv	10 Hz Train.Red App export